Table 1. Summary of sequence motifs identified in the avian promoter.
| Chicken | Turkey | Duck | Zebra finch | Flycatcher | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genome | Galgal4 | UMD2 | BGI_duck_1.0 | taeGut3.2.4 | FicAlb_1.4 | ||||||||||
| Ortholog/total | 13754/17108 | 13664/1500 | 13583/16450 | 15633/18618 | 13554/16266 | ||||||||||
| GC % | 50.43 | 45.71 | 45.72 | 47.21 | 48.71* | ||||||||||
| STR | pfc | imp | Units | pfc | imp | Units | pfc | imp | Units | pfc | imp | Units | pfc | imp | Units |
| Dinucleotide | 881 | 1843 | 7.64 | 670 | 1387 | 7.60 | 901 | 1481 | 7.26 | 870 | 2206 | 7.60 | 635 | 1510 | 8.91 |
| Tri- | 386 | 726 | 7.67 | 164 | 354 | 7.46 | 248 | 511 | 7.79 | 419 | 824 | 7.92 | 272 | 453 | 9.26 |
| Tetra- | 128 | 314 | 9.89 | 82 | 212 | 7.64 | 129 | 311 | 9.49 | 118 | 261 | 12.59 | 172 | 207 | 24.91 |
| Penta- | 146 | 284 | 10.75 | 49 | 138 | 8.19 | 82 | 178 | 12.82 | 155 | 325 | 12.21 | 176 | 178 | 31.47 |
| Hexa- | 24 | 91 | 9.81 | 8 | 31 | 7.25 | 14 | 69 | 13.01 | 69 | 168 | 11.10 | 122 | 114 | 32.18 |
| Total STRs | 1565 | 3258 | 973 | 2122 | 1374 | 2550 | 1631 | 3784 | 1377 | 2462 | |||||
| Occupation (%) | 0.4402 | 0.2615 | 0.4038 | 0.4593 | 0.7402 | ||||||||||
| G4 | 3963 | 1200 | 1817 | 3340 | 2952 | ||||||||||
| Occupation (%) | 0.5106 | 0.1732 | 0.2643 | 0.3749 | 0.4580 | ||||||||||
*Thirty or longer uninterrupted stretches of guanine or cytosine are replaced with N. Abbreviations are pfc [perfect (pure) repeat], imp [imperfect (interrupted) repeat], G4 (G-quadruplex).