Table 1. Top 20 hits identified in 32 male subjects (16 AUD cases vs. 16 controls).
CpGs | Chr. | Position | Genes | Locationa | βb | Effectc | Pnominald | qe |
---|---|---|---|---|---|---|---|---|
cg19099433 | 2 | 3748379 | ALLC | Body | 0.92 | −0.03 | 9.5 × 10−9 | 0.002 |
cg16460727 | 5 | 175297349 | CPLX2 | Promoter | 0.87 | −0.04 | 2.9 × 10−7 | 0.035 |
cg11938646 | 17 | 27050355 | SNORD42A | Promoter | 0.77 | 0.07 | 7.0 × 10−7 | 0.038 |
cg10767665 | 19 | 44279027 | KCNN4 | Body | 0.17 | 0.05 | 9.6 × 10−7 | 0.038 |
cg05764102 | 16 | 72991344 | ZFHX3 | Promoter | 0.91 | −0.03 | 1.8 × 10−6 | 0.038 |
cg11562309 | 7 | 94286473 | PEG10 | Promoter | 0.47 | 0.04 | 1.9 × 10−6 | 0.038 |
cg11415275 | 1 | 146715872 | CHD1L | Body | 0.13 | 0.05 | 2.6 × 10−6 | 0.038 |
cg09244748 | 11 | 63532530 | C11orf95 | Body | 0.68 | 0.07 | 2.7 × 10−6 | 0.038 |
cg14250274 | 7 | 66206258 | RABGEF1 | Promoter | 0.09 | 0.04 | 2.7 × 10−6 | 0.038 |
cg15836231 | 6 | 91490663 | Intergenic | 0.92 | 0.04 | 3.5 × 10−6 | 0.038 | |
cg09249675 | 19 | 3401572 | NFIC | Body | 0.86 | 0.06 | 4.9 × 10−6 | 0.038 |
cg11344164 | 10 | 101878520 | Intergenic | 0.87 | −0.05 | 5.5 × 10−6 | 0.038 | |
cg14932133 | 2 | 121739247 | GLI2 | Body | 0.90 | −0.04 | 6.3 × 10−6 | 0.038 |
cg16695999 | 5 | 93905343 | C5orf36 | Promoter | 0.81 | 0.05 | 6.5 × 10−6 | 0.038 |
cg17865555 | 19 | 49133647 | SPHK2 | 3′UTR | 0.26 | 0.10 | 7.0 × 10−6 | 0.038 |
cg13556266 | 4 | 8696173 | Intergenic | 0.83 | −0.06 | 7.6 × 10−6 | 0.038 | |
cg00147578 | 12 | 120730932 | Intergenic | 0.17 | 0.04 | 7.8 × 10−6 | 0.038 | |
cg03064005 | 11 | 68142768 | LRP5 | Body | 0.82 | −0.07 | 8.3 × 10−6 | 0.039 |
cg07881365 | 19 | 15833929 | Intergenic | 0.29 | 0.08 | 8.8 × 10−6 | 0.039 | |
cg06122518 | 1 | 168356673 | Intergenic | 0.20 | 0.06 | 9.4 × 10−6 | 0.039 |
aLocation of CpGs in promoter regions, gene bodies, or 3′ untranslated regions (3′ UTRs).
bAverage CpG methylation levels.
cLog-scale fold changes obtained by the R package limma.
dP values obtained by the R package limma.
eq values obtained by multiple testing controlling FDR at 0.05.