Table 1. Predicted Pseudomonas CDI-encoding locus.
| Strain | CdiB | CdiA / CT domaina | motif | CdiI* | Stop-Start /lenghtb | Class |
|---|---|---|---|---|---|---|
| P. syringae pv.tomato DC3000 | PSPTO_3230 | PSPTO_3229 | PT-HINT | CdiI- PSPTO_3229* | TAGCTATG /132 | I |
| P. fluorescens A506 | PflA506_0158 | PflA506_0159 | PT-HINT/DUF637 | PflA506_0160 | I | |
| P. fluorescens SBW25 | PFLU_3192 | PFLU_3191 / Tox-REase-7 (PF15649) | PT-HINT | PFLU_3190 | I | |
| P. protegens Pf-5 | PFL_1551 | PFL_1552 | PT-HINT/DUF637 | CdiI-PFL_1552* | TGATTTATG /133 | I |
| P. fluorescens SBW25 | PFLU_0148 | PFLU_0148 | PT-VENN | CdiI-PFLU_0148* | ATGAAAAAGTGA /72 | II |
| P. fluorescens SBW25 | PFLU_3246 | PFLU_3246 / Tox-HNH-HHH (PF15637) | PT-VENN | CdiI-PFLU_3246* | TAATG /143 | II |
| P. aeruginosa NCGM2.S1 | NCGM2_0040 | NCGM2_0041 / MafB19-deam (PF14437) | PT-VENN | CdiI-NCGM2_0041* | AATATGA /133 | II |
| P. fulva 12-X | Psefu_0120 | Psefu_0121/ Tox-REase-7 (PF15649) | none | Psefu_0122 | III | |
| P. fluorescens F113 | PSF113_0792 | PSF113_0793 / AHH (PF14412) | none | PSF113_0794 | III | |
| P. fluorescens A506 | PflA506_2790 | PflA506_2789 | none | CdiI-PflA506_2789* | TAGAGAAATTTTATATG /68 | III |
| P. entomophila L48 | PSEEN_3947 | PSEEN_3946 | DUF637 | CdiI-PSEEN_3946* | GCAGTGAA /129 | IV |
| P. brassicacearum DF41 | CD58_03745 | CD58_03750 / Ribonuclease/ribotoxin (IPR016191) | DUF637 | CD58_03755 | IV | |
| P. protegens CHA0 | PFLCHA0_c15900 | PFLCHA0_c15910 | DUF637 | CdiI-PFLCHA0_c15910* | TAGAGGAGGACGGTTATG /160 | IV |
| P. aeruginosa PAO1 | PA2463 | PA2462 /RNAse EndoU fold (PF14436) | none | CdiI- PA2462* | TAGGTCTTTTATG /84 | V |
| P. aeruginosa PA14 | PA14_32780 | PA14_32790 | DUF637 | CdiI-PA14_32790* | AGTGAA /113 | V |
| P. aeruginosa PA7 | PSPA7_2776 | PSPA7_2777 / CDI_toxin_Bp1026b_like | DUF637 | CdiI- PSPA7_2777* | GATGAGC /130 | V |
| P. aeruginosa LESB58 | PALES_2831 | PALES_28341 / Toxin deaminase (PF14424) | none | CdiI-PALES_28341* | GTAATGG /117 | V |
| P. aeruginosa PAO1 | PA0040 | PA0041 / CDI_toxin_Bp1026b_like | DUF637 | CdiI-PA0041* | CTGATTATG /84 | V |
| P. aeruginosa PA7 | PSPA7_0042 | PSPA7_0044 | DUF637 | PSPA7_0045 | V | |
| P. aeruginosa LESB58 | PALES_00391 | PALES_00401 | DUF637 | CdiI- PALES_00401* | AAAATGATT /106 | V |
| P. aeruginosa PACS2 | PaerPA_01000042 | PaerPA_01000043 /Toxin_49 (PF15529) | DUF637 | CdiI- PaerPA_01000043* | CATGAA /156 | V |
| P. aeruginosa PA14 | PA14_00490 | PA14_00510 | DUF637 | CdiI-PA14_00510* | CTGATGA/155 | V |
| P. aeruginosa NCGM2.S1 | NCGM2_3465 | NCGM2_3464 | DUF637 | CdiI- NCGM2_3464* | TGAGTTAATATG /106 | V |
| P. aeruginosa DK2 | PADK2_00205 | PADK2_00210 / Pyocin large subunit (COG5529) | DUF637 | CdiI-PADK2_00210* | TAAGGAGAGCCCAATG /80 | V |
| P. syringae pv.tomato DC3000 | PSPTO_3230 | PSPTO_3229 | PT-HINT | CdiI- PSPTO_3229* | TAGCTATG /132 | |
| P. fluorescens A506 | PflA506_0158 | PflA506_0159 | PT-HINT/DUF637 | PflA506_0160 | ||
| P. fluorescens SBW25 | PFLU_3192 | PFLU_3191 / Tox-REase-7 (PF15649) | PT-HINT | PFLU_3190 | ||
| P. protegens Pf-5 | PFL_1551 | PFL_1552 | PT-HINT/DUF637 | CdiI-PFL_1552* | TGATTTATG /133 | |
| P. fluorescens SBW25 | PFLU_0148 | PFLU_0148 | PT-VENN | CdiI-PFLU_0148* | ATGAAAAAGTGA /72 | |
| P. fluorescens SBW25 | PFLU_3246 | PFLU_3246 / Tox-HNH-HHH (PF15637) | PT-VENN | CdiI-PFLU_3246* | TAATG /143 | |
| P. aeruginosa NCGM2.S1 | NCGM2_0040 | NCGM2_0041 / MafB19-deam (PF14437) | PT-VENN | CdiI-NCGM2_0041* | AATATGA /133 | |
| P. fulva 12-X | Psefu_0120 | Psefu_0121/ Tox-REase-7 (PF15649) | none | Psefu_0122 | ||
| P. fluorescens F113 | PSF113_0792 | PSF113_0793 / AHH (PF14412) | none | PSF113_0794 | ||
| P. fluorescens A506 | PflA506_2790 | PflA506_2789 | none | CdiI-PflA506_2789* | TAGAGAAATTTTATATG /68 | |
| P. entomophila L48 | PSEEN_3947 | PSEEN_3946 | DUF637 | CdiI-PSEEN_3946* | GCAGTGAA /129 | |
| P. brassicacearum DF41 | CD58_03745 | CD58_03750 / Ribonuclease/ribotoxin (IPR016191) | DUF637 | CD58_03755 | ||
| P. protegens CHA0 | PFLCHA0_c15900 | PFLCHA0_c15910 | DUF637 | CdiI-PFLCHA0_c15910* | TAGAGGAGGACGGTTATG /160 | |
| P. aeruginosa PAO1 | PA2463 | PA2462 /RNAse EndoU fold (PF14436) | none | CdiI- PA2462* | TAGGTCTTTTATG /84 | |
| P. aeruginosa PA14 | PA14_32780 | PA14_32790 | DUF637 | CdiI-PA14_32790* | AGTGAA /113 | |
| P. aeruginosa PA7 | PSPA7_2776 | PSPA7_2777 / CDI_toxin_Bp1026b_like | DUF637 | CdiI- PSPA7_2777* | GATGAGC /130 | |
| P. aeruginosa LESB58 | PALES_2831 | PALES_28341 / Toxin deaminase (PF14424) | none | CdiI-PALES_28341* | GTAATGG /117 | |
| P. aeruginosa PAO1 | PA0040 | PA0041 / CDI_toxin_Bp1026b_like | DUF637 | CdiI-PA0041* | CTGATTATG /84 | |
| P. aeruginosa PA7 | PSPA7_0042 | PSPA7_0044 | DUF637 | PSPA7_0045 | ||
| P. aeruginosa LESB58 | PALES_00391 | PALES_00401 | DUF637 | CdiI- PALES_00401* | AAAATGATT /106 | |
| P. aeruginosa PACS2 | PaerPA_01000042 | PaerPA_01000043 /Toxin_49 (PF15529) | DUF637 | CdiI- PaerPA_01000043* | CATGAA /156 | |
| P. aeruginosa PA14 | PA14_00490 | PA14_00510 | DUF637 | CdiI-PA14_00510* | CTGATGA/155 | |
| P. aeruginosa NCGM2.S1 | NCGM2_3465 | NCGM2_3464 | DUF637 | CdiI- NCGM2_3464* | TGAGTTAATATG /106 | |
| P. aeruginosa DK2 | PADK2_00205 | PADK2_00210 / Pyocin large subunit (COG5529) | DUF637 | CdiI-PADK2_00210* | TAAGGAGAGCCCAATG /80 |
a CT domain: identified conserved domains using Interproscan5 program and NCBI database
b stop codon of cdiA gene and start codon of cdiI gene are in bold and underlined respectively, number indicate the length of the predicted CdiI protein
*: non-annotated ORF encoding potential CdiI proteins