Table 1. Various Approaches for hPSC Genome Engineering.
hPSC Genome Engineering | ||||
---|---|---|---|---|
| ||||
Knock-Out | Knock-In | |||
| ||||
Approach | INDEL | Early Stop Codon/ Exon Excision | Transgene Insertion | Point Mutation/SNP |
Mechanism | NHEJ | HDR | HDR | HDR |
Min# gRNAs | 1 -3 | 2 | 2 | 2 |
Donor Plasmid | No | Yes | Yes | Yes |
We do not elaborate the details for directed HDR Knock-Out or Point Mutation/SNP in this unit but donor plasmids with intervening in-frame stop codons or lacking critical exons may be designed as needed and applied with these protocols. For more detail on introducing Point Mutation/SNP, some researchers have found single DSBs with high concentration mutant DNA oligonucleotide donors to be effective. Please review Miyaoka et al., 2014 for more detail on that approach.