Table 1. Designation and characteristics of Leishmania infantum isolates used in this study.
| Endemic area | Patients | Sample WHO code | Y | C F / H | HIV status | Zymo | G | P | Sub-Pop A | Sub-Pop A | Sub-Pop B |
|---|---|---|---|---|---|---|---|---|---|---|---|
| K = 6 | K = 4 | K = 2 | |||||||||
| P | Patient 1 | MHOM/FR/94/LPM135 | 1994 | VL | HIV | MON-1 | 1 | A | 6 | 3 | |
| AM | Patient 2 | MHOM/FR/90/LPN63 | 1990 | VL | HIV | MON-24 | 2 | A | 6 | 3 | |
| AM | Patient 3 | MHOM/FR/2002/LPN202 | 2002 | IVL | MON-1 | 3 | A | 4 | 1 | ||
| P | MCAN/FR/2000/LPM206 | 2000 | CanL | MON-1 | 4 | A | 4 | 1 | |||
| AM | Patient 4 | MHOM/FR/2003/LPN212 | 2003 | VL | HIV | MON-1 | 4 | A | 4 | 1 | |
| AM | Patient 4 | MHOM/FR/2004/LPN243 | 2004 | RVL | HIV | MON-1 | 4 | A | 4 | 1 | |
| AM | Patient 5 | MHOM/FR/90/LPN67 | 1990 | VL | HIV | MON-1 | 5 | A | 4 | 1 | |
| AM | Patient 6 | MHOM/FR/96/LPN126 | 1996 | IVL | MON-1 | 6 | A | 4/3 | 1 | ||
| P | Patient 7 | MHOM/FR/93/LPM110 | 1993 | VL | HIV | MON-11 | 7 | A | 4/6 | 1/3 | |
| AM | Patient 8 | MHOM/FR/90/LPN62 | 1990 | VL | MON-1 | 8 | B | 1 | |||
| AM | Patient 9 | MHOM/FR/98/LPN163 | 1998 | IVL | MON-1 | 9 | B | 1 | |||
| P | Patient 10 | MHOM/FR/96/LPM150 | 1996 | VL | HIV | MON-1 | 10 | A | 4/5 | 1/2 | |
| AM | Patient 11 | MHOM/FR/2001/LPN192 | 2001 | IVL | MON-1 | 11 | B/A | ||||
| CE | MCAN/FR/2006/LPN278 | 2006 | CanL | MON-1 | 12 | A | 4/5 | 1/2 | |||
| P | Patient 12 | MHOM/FR/97/LPM180 | 1997 | VL | HIV | MON-1 | 13 | A | 5 | 2 | |
| P | MCAN/FR/2000/LPM207 | 2000 | CanL | MON-1 | 13 | A | 5 | 2 | |||
| P | Patient 13 | MHOM/FR/2009/LPM262 | 2009 | VL | HIV | MON-1 | 13 | A | 5 | 2 | |
| P | Patient 14 | MHOM/FR/2000/LPM197 | 2000 | VL | HIV | MON-1 | 14 | A | 5 | 2 | |
| AM | Patient 15 | MHOM/FR/97/LPN161 | 1997 | CL | MON-1 | 15 | A | 1 | 4 | ||
| CO | Patient 16 | MHOM/FR/97/LPN154 | 1997 | VL | MON-1 | 16 | A | 6 | 3 | ||
| P | Patient 17 | MHOM/FR/2002/LPM225 | 2002 | VL | HIV | MON-1 | 17 | A | 5 | 2 | |
| P | Patient 18 | MHOM/FR/2002/LPM215 | 2002 | VL | HIV | MON-1 | 17 | A | 5 | 2 | |
| P | Patient 19 | MHOM/FR/2000/LPM 195 | 2000 | VL | HIV | MON-1 | 18 | A | 2/5/3 | 1/3/2 | |
| AM | Patient 20 | MHOM/FR/86/LPN30 | 1986 | VL | HIV | MON-1 | 19 | A/B | |||
| AM | Patient 21 | MHOM/FR/88/LPN50 | 1988 | VL | HIV | MON-1 | 20 | A | 5 | 2 | |
| AM | Patient 29 | MHOM/FR/84/LPN23 | 1984 | VL | MON-1 | 21 | A | 5 | 2 | ||
| AM | Patient 30 | MHOM/FR/85/LPN25a | 1985 | VL | MON-1 | 21 | A | 5 | 2 | ||
| AM | Patient 31 | MHOM/FR/94/LPN112 | 1994 | VL | MON-1 | 21 | A | 5 | 2 | ||
| P | Patient 22 | MHOM/FR/96/LPM151 | 1996 | VL | HIV | MON-1 | 21 | A | 5 | 2 | |
| AM | Patient 32 | MHOM/FR/96/LPN132 | 1996 | VL | MON-1 | 21 | A | 5 | 2 | ||
| P | Patient 23 | MHOM/FR/97/LPM169 | 1997 | VL | HIV | MON-1 | 21 | A | 5 | 2 | |
| P | Patient 24 | MHOM/FR/97/LPM172 | 1997 | VL | HIV | MON-1 | 21 | A | 5 | 2 | |
| P | Patient 35 | MHOM/FR/2004/LPN228 | 2004 | IVL | MON-1 | 21 | A | 5 | 2 | ||
| P | Patient 25 | MHOM/FR/2005/LPM242 | 2005 | IVL | MON-1 | 21 | A | 5 | 2 | ||
| P | Patient 26 | MHOM/FR/2005/LPM247 | 2005 | IVL | MON-1 | 21 | A | 5 | 2 | ||
| P | Patient 27 | MHOM/FR/2009/LPM261 | 2009 | IVL | MON-1 | 21 | A | 5 | 2 | ||
| AM | MCAN/FR/95/LPN122* | CanL | MON-1 | 21 | A | 5 | 2 | ||||
| AM | MCAN/FR/95/LPN123* | CanL | MON-1 | 21 | A | 5 | 2 | ||||
| AM | MCAN/FR/95/LPN124* | CanL | MON-1 | 21 | A | 5 | 2 | ||||
| AM | Patient 33 | MHOM/FR/96/LPN136* | 1996 | AC | MON-1 | 21 | A | 5 | 2 | ||
| AM | Patient 34 | MHOM/FR/96/LPN131* | 1996 | AC | MON-1 | 21 | A | 5 | 2 | ||
| AM | Patient 28 | MHOM/FR/81/LPN5 | 1981 | IVL | MON-1 | 21 | A | 5 | 2 | ||
| AM | Patient 36 | n. d. | 2009 | IVL | MON-1 | 21 | A | 5 | 2 | ||
| AM | Patient 37 | MHOM/FR/90/LPN61 | 1990 | IVL | MON-1 | 22 | A/B | ||||
| AM | Patient 38 | MHOM/FR/2002/LPN199 | 2002 | VL | MON-1 | 23 | A | 3 | 1 | ||
| P | Patient 39 | MHOM/FR/2007/LPM255 | 2007 | IVL | MON-1 | 24 | A | 4/5/2 | 1 | ||
| P | Patient 40 | MHOM/FR/2002/LPM216 | 2002 | VL | HIV | MON-1 | 25 | A | 4/3/2 | 1 | |
| P | Patient 41 | MHOM/FR/2002/LPM217 | 2002 | VL | MON-1 | 25 | A | 4/3/2 | 1 | ||
| P | Patient 42 | MHOM/FR/98/LPM185 | 1998 | VL | HIV | MON-1 | 26 | A | 4/5/6 | 1 | |
| CO | Patient 43 | MHOM/FR/2006/LPM251 | 2006 | IVL | MON-24 | 27 | A | 2 | 1 | ||
| AM | Patient 44 | MHOM/FR/2001/LPN195 | 2001 | VL | MON-1 | 28 | A | 5/2/4 | 1/2 | ||
| AM | Patient 45 | MHOM/FR/2007/LPN312 | 2007 | IVL | MON-1 | 29 | A | 3 | 1 | ||
| AM | MCAN/FR/86/LPN28 | 1986 | CanL | MON-1 | 30 | A | 3 | 1 | |||
| P | Patient 46 | MHOM/FR/2003/LPN221 | 2003 | CL | MON-1 | 31 | A | 3/2 | 1 | ||
| AM | Patient 47 | MHOM/FR/97/LPN159 | 1997 | VL | MON-1 | 32 | B/A | ||||
| AM | Patient 48 | MHOM/FR/90/LPN64 | 1990 | VL | HIV | MON-1 | 33 | A | 3 | 1 | |
| AM | Patient 49 | MHOM/FR/89/LPN54 | 1989 | VL | MON-1 | 34 | B | 1 | |||
| AM | Patient 50 | MHOM/FR/91/LPN70 | 1991 | IVL | MON-1 | 34 | B | 1 | |||
| AM | Patient 51 | MHOM/FR/92/LPN78 | 1992 | VL | MON-1 | 34 | B | 1 | |||
| AM | Patient 52 | MHOM/FR/95/LPN116 | 1995 | VL | HIV | MON-1 | 34 | B | 1 | ||
| AM | Patient 53 | MHOM/FR/96/LPN141 | 1996 | VL | MON-1 | 34 | B | 1 | |||
| AM | Patient 54 | MHOM/FR/97/LPN150 | 1997 | IVL | MON-1 | 34 | B | 1 | |||
| AM | Patient 55 | MHOM/FR/2001/LPN181 | 2001 | IVL | MON-1 | 34 | B | 1 | |||
| AM | Patient 56 | MHOM/FR/2007/LPN313 | 2007 | CL | MON-1 | 34 | B | 1 | |||
| AM | Patient 57 | MHOM/FR/2011/LPN358 | 2011 | VL | MON-1 | 34 | B | 1 | |||
| AM | MCAN/FR/89/LPN57 | 1989 | CanL | MON-1 | 35 | A/B | |||||
| AM | Patient 58 | MHOM/FR/95/LPN120 | 1995 | VL | HIV | MON-1 | 35 | A/B | |||
| AM | Patient 60 | MHOM/FR/92/LPN84 | 1992 | IVL | MON-1 | 36 | A | 3 | 1 | ||
| AM | Patient 61 | MHOM/FR/94/LPN103 | 1994 | CL | MON-1 | 36 | A | 3 | 1 | ||
| AM | Patient 62 | MHOM/FR/95/LPN115 | 1995 | IVL | MON-1 | 36 | A | 3 | 1 | ||
| AM | Patient 63 | MHOM/FR/95/LPN119 | 1995 | VL | HIV | MON-1 | 36 | A | 3 | 1 | |
| CO | Patient 59 | MHOM/FR/96/LPM157 | 1996 | VL | MON-1 | 36 | A | 3 | 1 | ||
| AM | Patient 64 | MHOM/FR/2001/LPN187 | 2001 | VL | MON-1 | 36 | A | 3 | 1 | ||
| AM | Patient 64 | MHOM/FR/2002/LPN198 | 2002 | RVL | MON-1 | 36 | A | 3 | 1 | ||
| P | Patient 65 | MHOM/FR/94/LPM112 | 1994 | VL | HIV | MON-1 | 37 | A | 4/5/1 | 1/2/4 | |
| P | Patient 66 | MHOM/FR/2006/LPM250 | 2006 | VL | MON-1 | 37 | A | 4/5/1 | 1/2/4 | ||
| AM | Patient 67 | MHOM/FR/93/LPN92 | 1993 | VL | HIV | MON-1 | 38 | A | 2/1/3 | 3/4/1 | |
| P | Patient 68 | MHOM/FR/97/LPM173 | 1997 | VL | MON-1 | 39 | B | 1 | |||
| AM | Patient 69 | MHOM/FR/86/LPN29 | 1986 | VL | HIV | MON-1 | 40 | A/B | |||
| AM | Patient 71 | MHOM/FR/87/LPN33 | 1987 | IVL | MON-1 | 41 | A/B | ||||
| AM | MCAN/FR/87/LPN34 | 1987 | CanL | MON-1 | 41 | A/B | |||||
| AM | Patient 72 | MHOM/FR/89/LPN51 | 1989 | VL | HIV | MON-1 | 41 | A/B | |||
| AM | Patient 73 | MHOM/FR/98/LPN164 | 1998 | VL | HIV | 41 | A/B | ||||
| AM | Patient 70 | MHOM/FR/2005/LPM244 | 2005 | VL | HIV | MON-1 | 41 | A/B | |||
| AM | Patient 74 | MHOM/FR/96/LPN146 | 1996 | VL | HIV | MON-1 | 42 | B | 2 | ||
| AM | Patient 75 | MHOM/TR/94/LPN101 | 1994 | IVL | MON-1 | 43 | B | 1 | |||
| AM | Patient 76 | MHOM/FR/94/LPN104 | 1994 | IVL | MON-1 | 43 | B | 1 | |||
| AM | Patient 77 | MHOM/FR/95/LPN113 | 1995 | IVL | MON-1 | 43 | B | 1 | |||
| AM | Patient 78 | MHOM/FR/95/LPN121 | 1995 | VL | HIV | MON-1 | 43 | B | 1 | ||
| AM | Patient 86 | MHOM/FR/2002/LPN201 | 2002 | RVL | HIV | MON-1 | 43 | B | 1 | ||
| AM | Patient 87 | MHOM/FR/2004/LPN233 | 2004 | VL | HIV | MON-1 | 43 | B | 1 | ||
| AM | Patient 79 | MHOM/FR/96/LPN134* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 80 | MHOM/FR/96/LPN137* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 81 | MHOM/FR/96/LPN138* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 82 | MHOM/FR/96/LPN144* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 83 | MHOM/FR/96/LPN143* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 84 | MHOM/FR/96/LPN142* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 85 | MHOM/IT/96/LPN145* | 1996 | AC | MON-1 | 43 | B | 1 | |||
| AM | Patient 88 | MHOM/FR/80/LPN3 | 1980 | IVL | MON-1 | 44 | B | 1 | |||
| AM | Patient 89 | MHOM/00/94/LPN108 | 1994 | VL | HIV | MON-1 | 44 | B | 1 | ||
| AM | Patient 90 | MHOM/FR/2004/LPN236 | 2004 | VL | MON-1 | 45 | B | 1 | |||
| AM | MCAN/FR/82/LPN16 | 1983 | CanL | MON-1 | 46 | B | 1 | ||||
| AM | Patient 91 | MHOM/FR/83/LPN19 | 1983 | VL | MON-1 | 46 | B | 1 | |||
| AM | Patient 92 | MHOM/FR/84/LPN20 | 1984 | VL | MON-1 | 46 | B | 1 | |||
| AM | Patient 93 | MHOM/FR/85/LPN24 | 1985 | VL | MON-1 | 46 | B | 1 | |||
| AM | MCAN/FR/87/LPN37 | 1987 | CanL | MON-1 | 46 | B | 1 | ||||
| AM | Patient 94 | MHOM/FR/88/LPN46 | 1988 | VL | MON-1 | 46 | B | 1 | |||
| AM | Patient 95 | MHOM/FR/89/LPN59 | 1989 | VL | HIV | MON-1 | 46 | B | 1 | ||
| AM | Patient 96 | MHOM/FR/93/LPN91 | 1993 | IVL | MON-1 | 46 | B | 1 | |||
| AM | Patient 97 | MHOM/00/93/LPN94 | 1993 | VL | HIV | MON-1 | 46 | B | 1 | ||
| AM | Patient 98 | MHOM/FR/95/LPN107 | 1994 | IVL | MON-1 | 46 | B | 1 | |||
| AM | Patient 99 | MHOM/FR/95/LPN114 | 1994 | IVL | MON-1 | 46 | B | 1 | |||
| AM | Patient 100 | MHOM/FR/95/LPN118 | 1995 | VL | HIV | MON-1 | 46 | B | 1 | ||
| AM | Patient 101 | MHOM/FR/96/LPN125 | 1996 | VL | MON-1 | 46 | B | 1 | |||
| AM | Patient 102 | MHOM/FR/97/LPN148 | 1997 | VL | HIV | MON-1 | 46 | B | 1 | ||
| P | Patient 105 | MHOM/FR/97/LPM139 | 1995 | VL | HIV | MON-1 | 46 | B | 1 | ||
| AM | Patient 103 | MHOM/FR/97/LPN152 | 1997 | VL | MON-1 | 46 | B | 1 | |||
| AM | Patient 104 | MHOM/FR/2001/LPN180 | 2001 | IVL | MON-1 | 46 | B | 1 | |||
| AM | Patient 106 | MHOM/FR/2005/LPN257 | 2005 | IVL | MON-1 | 47 | B | 1 | |||
| AM | Patient 107 | MHOM/FR/84/LPN21 | 1984 | VL | MON-1 | 48 | B | 1 | |||
| AM | Patient 108 | MHOM/FR/92/LPN85 | 1992 | IVL | MON-1 | 48 | B | 1 | |||
| AM | Patient 109 | MHOM/FR/2004/LPN240 | 2004 | VL | MON-1 | 48 | B | 1 | |||
| AM | Patient 110 | n. d. | 2011 | IVL | MON-1 | 49 | B | 1 | |||
| AM | Patient 111 | MHOM/FR/92/LPN86 | 1992 | IVL | MON-1 | 50 | B | 2 | |||
| AM | Patient 112 | MHOM/FR/2001/LPN191 | 2001 | VL | HIV | MON-1 | 50 | B | 2 | ||
| AM | Patient 113 | MHOM/FR/2008/LPN321 | 2008 | VL | MON-1 | 50 | B | 2 | |||
| AM | Patient 114 | MHOM/FR/99/LPN170 | 1999 | VL | MON-1 | 51 | B | 2 | |||
| AM | Patient 115 | MHOM/FR/2006/LPN281 | 2006 | VL | MON-1 | 52 | B | 2 | |||
| CE | MCAN/FR/2006/LPN285 | 2006 | CanL | MON-1 | 52 | B | 2 | ||||
| AM | Patient 116 | MHOM/FR/87/LPN36 | 1987 | VL | HIV | MON-1 | 53 | B | 2 | ||
| AM | Patient 117 | MHOM/FR/91/LPN71 | 1991 | VL | HIV | MON-1 | 53 | B | 2 | ||
| AM | Patient 118 | MHOM/FR/93/LPN96 | 1992 | VL | MON-1 | 53 | B | 2 | |||
| AM | Patient 119 | MHOM/FR/93/LPN99 | 1993 | VL | HIV | MON-1 | 53 | B | 2 | ||
| AM | MCAN/FR/94/LPN102 | 1994 | CanL | MON-1 | 53 | B | 2 | ||||
| AM | Patient 120 | MHOM/FR/95/LPN117 | 1995 | VL | MON-1 | 53 | B | 2 | |||
| AM | Patient 121 | MHOM/FR/2001/LPN189 | 2001 | VL | MON-1 | 53 | B | 2 | |||
| AM | Patient 122 | MHOM/FR/78/LPN1 | 1978 | VL | MON-1 | 54 | B | 2 | |||
| AM | MCAN/FR/82/LPN6 | 1982 | CanL | MON-1 | 55 | B | 2 | ||||
| AM | Patient 123 | MHOM/FR/84/LPN22 | 1983 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 124 | MHOM/FR/86/LPN31 | 1986 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 125 | MHOM/FR/88/LPN48 | 1988 | CL | MON-1 | 55 | B | 2 | |||
| AM | Patient 126 | MHOM/FR/89/LPN55 | 1989 | IVL | MON-1 | 55 | B | 2 | |||
| AM | Patient 127 | MHOM/FR/90/LPN68 | 1990 | IVL | MON-1 | 55 | B | 2 | |||
| AM | Patient 128 | MHOM/FR/92/LPN76 | 1992 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 129 | MHOM/FR/92/LPN77 | 1992 | VL | HIV | MON-1 | 55 | B | 2 | ||
| AM | Patient 130 | MHOM/FR/92/LPN80 | 1992 | VL | HIV | MON-1 | 55 | B | 2 | ||
| AM | Patient 131 | MHOM/FR/92/LPN82 | 1992 | VL | HIV | MON-1 | 55 | B | 2 | ||
| CO | Patient 146 | MHOM/FR/93/LPN95 | 1993 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 132 | MHOM/FR/94/LPN106 | 1994 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 133 | MHOM/FR/94/LPN109 | 1994 | VL | HIV | MON-1 | 55 | B | 2 | ||
| AM | Patient 135 | MHOM/FR/96/LPN133 | 1996 | IVL | MON-1 | 55 | B | 2 | |||
| AM | Patient 134 | MHOM/FR/96/LPN130 | 1996 | VL | MON-1 | 55 | B | 2 | |||
| AM | MFEL/FR/96/LPN139 | 1996 | CatL | MON-1 | 55 | B | 2 | ||||
| AM | Patient 136 | MHOM/FR/97/LPN155 | 1997 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 137 | MHOM/FR/97/LPN158 | 1997 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 139 | MHOM/FR/2000/LPN176 | 2000 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 138 | MHOM/FR/2000/LPN175 | 2000 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 140 | MHOM/FR/2003/LPN209 | 2003 | IVL | MON-1 | 55 | B | 2 | |||
| AM | Patient 141 | MHOM/FR/2003/LPN217 | 2003 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 142 | MHOM/FR/2006/LPN259 | 2006 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 143 | MHOM/FR/2006/LPN282 | 2006 | IVL | MON-1 | 55 | B | 2 | |||
| AM | Patient 144 | MHOM/FR/2007/LPN316 | 2007 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 145 | MHOM/FR/2011/LPN357 | 2011 | VL | MON-1 | 55 | B | 2 | |||
| AM | Patient 147 | MHOM/FR/96/LPN127 | 1996 | VL | HIV | MON-1 | 56 | B | 2 | ||
| AM | MCAN/FR/82/LPN10 | 1982 | CanL | MON-1 | 57 | B | 2 | ||||
| AM | Patient 148 | MHOM/FR/89/LPN53 | 1989 | VL | MON-1 | 57 | B | 2 | |||
| AM | Patient 149 | MHOM/FR/90/LPN66 | 1990 | VL | MON-1 | 57 | B | 2 | |||
| AM | Patient 150 | MHOM/FR/93/LPN90 | 1993 | VL | MON-1 | 57 | B | 2 | |||
| AM | Patient 151 | MHOM/FR/93/LPN93 | 1993 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 152 | MHOM/FR/93/LPN98 | 1993 | VL | HIV | MON-1 | 57 | B | 2 | ||
| AM | Patient 153 | MHOM/FR/94/LPN110 | 1994 | VL | HIV | MON-1 | 57 | B | 2 | ||
| AM | Patient 154 | MHOM/FR/96/LPN140 | 1996 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 155 | MHOM/FR/97/LPN156 | 1997 | VL | HIV | MON-1 | 57 | B | 2 | ||
| AM | Patient 156 | MHOM/FR/2000/LPN178 | 2000 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 157 | MHOM/FR/2001/LPN190 | 2001 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 158 | MHOM/FR/2006/LPN277 | 2006 | VL | MON-1 | 57 | B | 2 | |||
| AM | Patient 159 | MHOM/FR/2011/LPN351 | 2011 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 160 | MHOM/FR/2011/LPN356 | 2011 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 161 | MHOM/FR/2011/LPN366 | 2011 | IVL | MON-1 | 57 | B | 2 | |||
| AM | Patient 162 | MHOM/FR/2004/LPN237 | 2004 | VL | MON-1 | 58 | B | 2 | |||
| CO | Patient 163 | MHOM/FR/94/LPN105 | 1994 | VL | HIV | MON-1 | 59 | B | 1 | ||
| P | Patient 164 | MHOM/FR/96/LPM154 | 1996 | IVL | MON-1 | 60 | A | 3/4/5/2 | 1 | ||
| P | Patient 165 | MHOM/FR/97/LPM174 | 1997 | VL | HIV | MON-1 | 61 | A | 4/3/2 | 1 | |
| AM | Patient 166 | MHOM/FR/99/LPN173 | 1999 | IVL | MON-1 | 62 | A/B | ||||
| P | Patient 167 | MHOM/FR/97/LPM170 | 1997 | IVL | MON-1 | 63 | A | 1 | 4 | ||
| P | Patient 168 | MHOM/FR/97/LPM177 | 1997 | VL | HIV | MON-1 | 63 | A | 1 | 4 | |
| P | Patient 169 | MHOM/FR/2000/LPM201 | 2000 | VL | HIV | MON-1 | 63 | A | 1 | 4 | |
| P | Patient 170 | MHOM/FR/2001/LPM209 | 2001 | VL | HIV | MON-1 | 64 | A | 1/3/4/2 | 4/1/2 | |
| P | Patient 171 | MHOM/FR/97/LPM166 | 1997 | VL | HIV | MON-1 | 65 | A | 1 | 4 | |
| P | Patient 172 | MHOM/FR/2004/LPM236 | 2004 | IVL | MON-1 | 66 | A | 1 | 4 | ||
| P | Patient 173 | MHOM/FR/2006/LPM252 | 2006 | VL | MON-1 | 67 | A | 1 | 4 | ||
| P | Patient 174 | MHOM/FR/94/LPM116 | 1994 | VL | HIV | MON-1 | 68 | A | 1 | 4 | |
| P | Patient 175 | MHOM/FR/96/LPM138 | 1996 | VL | HIV | MON-1 | 68 | A | 1 | 4 | |
| P | Patient 176 | MHOM/FR/99/LPM189 | 1999 | IVL | MON-1 | 68 | A | 1 | 4 | ||
| P | Patient 177 | MHOM/FR/2000/LPM204 | 2000 | IVL | MON-1 | 68 | A | 1 | 4 | ||
| P | Patient 178 | MHOM/FR/98/LPM183 | 1998 | VL | HIV | MON-1 | 69 | A | 1/3/2 | 4 | |
| P | Patient 179 | MHOM/FR/97/LPM178 | 1997 | UK | MON-1 | 69 | A | 1/3/2 | 4 | ||
| P | Patient 180 | MHOM/FR/2003/LPM232 | 2003 | IVL | MON-1 | 70 | A | 1 | 4 | ||
| P | Patient 181 | MHOM/FR/96/LPM152 | 1996 | VL | MON-1 | 71 | A | 1/3/2 | 4 | ||
| P | Patient 182 | MHOM/FR/97/LPM168 | 1997 | VL | HIV | MON-1 | 72 | A | 1 | 4 | |
| P | Patient 183 | MHOM/FR/98/LPM181 | 1998 | MCL | MON-1 | 73 | A | 5 | 2 | ||
| P | Patient 184 | MHOM/FR/96/LPM156 | 1996 | IVL | MON-1 | 74 | A | 5/1/4/2 | 2/4/1 | ||
| CE | IPER/FR/84/LEM576* | 1984 | PHLE | MON-1 | 75 | A | 4/1/2 | 1/4 | |||
| CE | IARI/FR/84/LEM595* | 1984 | PHLE | MON-1 | 75 | A | 4/1/2 | 1/4 | |||
| AM | Patient 185 | MHOM/FR/96/LPN129 | 1996 | VL | HIV | MON-1 | 76 | A | 1 | 4 | |
| AM | Patient 186 | MHOM/FR/88/LPN45 | 1988 | VL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 187 | MHOM/FR/89/LPN58 | 1989 | IVL | MON-1 | 77 | A | 1 | 4 | ||
| AM | Patient 188 | MHOM/FR/91/LPN69 | 1991 | VL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 189 | MHOM/FR/96/LPN128 | 1996 | VL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 190 | MHOM/FR/97/LPN151 | 1996 | VL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 86 | MHOM/FR/97/LPN153 | 1997 | VL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | MCAN/FR/98/LPN168 | 1998 | CanL | 77 | A | 1 | 4 | ||||
| AM | Patient 86 | MHOM/FR/2000/LPN177 | 2000 | RVL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 86 | MHOM/FR/2001/LPN185 | 2001 | RVL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 191 | MHOM/FR/2001/LPN186 | 2001 | VL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 86 | MHOM/FR/2003/LPN215 | 2003 | RVL | HIV | MON-1 | 77 | A | 1 | 4 | |
| AM | Patient 192 | MHOM/FR/2007/LPN314* | 2007 | VL | HIV | MON-1 | 78 | A | 1/6 | 4/3/1 | |
| AM | MCAN/FR/2006/LPN267 | 2006 | CanL | MON-1 | 79 | A | 1/6/3/4 | 4/2/3 | |||
| P | Patient 193 | MHOM/FR/2002/LPM222 | 2002 | VL | HIV | MON-1 | 80 | A | 1/5/6 | 4/2 | |
| P | Patient 194 | MHOM/FR/2001/LPM214 | 2001 | VL | MON-1 | 81 | A | 2/4 | 1 | ||
| P | Patient 195 | MHOM/FR/2002/LPM226 | 2002 | VL | HIV | MON-1 | 82 | A | 2/4 | 1 | |
| P | Patient 196 | MHOM/FR/2002/LPM228 | 2002 | VL | MON-1 | 83 | A | 2/4 | 1 | ||
| P | Patient 197 | MHOM/FR/96/LPM155 | 1996 | VL | MON-1 | 84 | A | 2/3/1 | 1 | ||
| P | Patient 198 | MHOM/FR/96/LPM159 | 1996 | VL | MON-1 | 84 | A | 2/3/1 | 1 | ||
| P | Patient 199 | MHOM/FR/94/LPM133 | 1994 | VL | HIV | MON-1 | 85 | A | 2 | 1 | |
| P | Patient 200 | MHOM/FR/96/LPM161 | 1996 | IVL | HIV | MON-1 | 85 | A | 2 | 1 | |
| P | Patient 201 | MHOM/FR/2009/LPM264 | 2009 | MCL | MON-1 | 85 | A | 2 | 1 | ||
| P | Patient 202 | MHOM/FR/94/LPM122-2 | 1994 | VL | HIV | MON-1 | 86 | A | 1/3/4 | 4/1 | |
| P | Patient 203 | MHOM/FR/2001/LPM212 | 2001 | CL | MON-1 | 87 | A | 4/3/2 | 1 | ||
| P | Patient 204 | MHOM/FR/2008/LPM260 | 2008 | VL | HIV | MON-1 | 88 | A | 2 | 1/3 | |
| P | Patient 205 | MHOM/FR/99/LPM191 | 1999 | CL | HIV | MON-1 | 89 | A | 1/3 | 1/4 | |
| P | Patient 206 | MHOM/FR/95/LPM137 | 1995 | VL | HIV | MON-1 | 90 | A | 3/6 | 1/3 | |
| P | Patient 207 | MHOM/FR/2000/LPM196 | 2000 | VL | HIV | MON-1 | 91 | A | 4 | 1 | |
| P | Patient 208 | MHOM/FR/94/LPM118 | 1994 | VL | HIV | MON-108 | 92 | A | 4/1/5 | 1/2/4 | |
| CE | Patient 212 | MHOM/FR/85/LEM716* | 1985 | VL | MON-1 | 93 | A | 4 | 1 | ||
| P | Patient 210 | MHOM/FR/97/LPM176 | 1997 | IVL | MON-1 | 93 | A | 4 | 1 | ||
| CO | Patient 209 | MHOM/FR/98/LPM186 | 1998 | VL | MON-1 | 93 | A | 4 | 1 | ||
| P | Patient 211 | MHOM/FR/2001/LPN183 | 2001 | VL | MON-1 | 93 | A | 4 | 1 | ||
| AM | Patient 213 | MHOM/FR/83/LPN18 | 1983 | VL | MON-1 | 94 | A | 4 | 1 | ||
| CE | Patient 214 | MHOM/FR/87/LEM1098* | 1987 | CL | MON-1 | 94 | A | 4 | 1 | ||
| CE | Patient 215 | MHOM/FR/78/LEM75* | 1978 | VL | MON-1 | 94 | A | 4 | 1 | ||
| CE | Patient 216 | MHOM/FR/85/LEM663* | 1985 | VL | MON-1 | 95 | A | 4 | 1 | ||
| AM | Patient 217 | MHOM/FR/88/LPN41 | 1988 | VL | HIV | MON-1 | 96 | A | 2/5 | 3/2 | |
| AM | Patient 218 | MHOM/FR/2003/LPN213 | 2003 | VL | MON-1 | 97 | A | 4 | 1 | ||
| AM | Patient 219 | MHOM/FR/96/LPM162 | 1996 | CL | MON-24 | 98 | A | 6 | 3 | ||
| AM | Patient 220 | MHOM/00/2004/LPN234 | 2004 | CL | MON-24 | 99 | A | 6 | 3 | ||
| AM | Patient 190 | MHOM/FR/2001/LPN182 | 2001 | RVL | HIV | MON-1 | 100 | A | 1 | 4 | |
| AM | Patient 190 | MHOM/FR/2001/LPN188 | 2001 | RVL | HIV | MON-1 | 100 | A | 1 | 4 | |
| P | Patient 221 | MHOM/FR/2000/LPM200 | 2000 | VL | HIV | MON-1 | 101 | A | 2/1 | 1/3/4 | |
| P | Patient 222 | MHOM/FR/94/LPM120 | 1994 | VL | HIV | MON-1 | 102 | A | 2/1/3 | 1/4 | |
| P | Patient 223 | MHOM/FR/99/LPM194 | 1999 | MCL | MON-1 | 103 | A | 4/3/2 | 1 | ||
| P | Patient 224 | MHOM/FR/96/LPM158 | 1996 | VL | MON-1 | 104 | A | 4/2/5 | 1/2 | ||
| AM | MCAN/FR/80/LPN4 | 1980 | CanL | MON-1 | 105 | A | 4/3/2 | 1 | |||
| AM | MCAN/FR/82/LPN8 | 1982 | CanL | MON-1 | 105 | A | 4/3/2 | 1 | |||
| AM | Patient 225 | MHOM/FR/99/LPN171 | 1999 | IVL | MON-1 | 106 | A | 3 | 1 | ||
| P | Patient 226 | MHOM/FR/2001/LPM211 | 2001 | VL | HIV | MON-1 | 107 | A | 3 | 1 | |
| P | Patient 227 | MHOM/00/00/LPM148 | 1995 | UK | MON-1 | 108 | A | 3 | 1 | ||
| AM | Patient 228 | n. d. | 2011 | VL | MON-1 | 109 | A | 3 | 1 | ||
| AM | MCAN/FR/86/LPN27 | 1986 | CanL | MON-1 | 110 | A | 3 | 1 | |||
| AM | Patient 229 | MHOM/FR/99/LPN174 | 1999 | CL | MON-24 | 111 | A | 6 | 3 | ||
| AM | Patient 230 | MHOM/FR/2005/LPN253 | 2001 | VL | HIV | MON-80 | 112 | A | 6 | 3 | |
| P | Patient 231 | MHOM/00/2003/LPM233 | 2003 | IVL | MON-1 | 113 | A | 2 | 3 | ||
| CO | Patient 232 | MHOM/FR/2000/LPM205 | 2000 | VL | MON-1 | 114 | A | 6 | 3 | ||
| CO | Patient 233 | MHOM/FR/92/LPN83 | 1991 | CL | HIV | MON-1 | 115 | A | 6 | 3 | |
| CO | Patient 234 | MHOM/FR/99/LPM190 | 1999 | VL | HIV | MON-1 | 116 | A | 6 | 3 | |
| AM | Patient 235 | MHOM/FR/89/LPN60 | 1989 | VL | HIV | MON-1 | 117 | A | 2 | 1/3 | |
| P | Patient 236 | MHOM/FR/2008/LPM259 | 2008 | VL | HIV | MON-1 | 118 | A | 2/1 | 1/4/3 | |
| P | Patient 237 | MHOM/FR/2007/LPM254 | 2007 | IVL | MON-1 | 119 | A | 6 | 3 | ||
| AM | Patient 238 | MHOM/FR/93/LPN97 | 1993 | CL | MON-24 | 120 | A | 6 | 3 | ||
| P | Patient 239 | MHOM/FR/95/LPM136 | 1995 | VL | HIV | MON-1 | 121 | A | 6 | 3 |
Legend of columns: Endemic area: AM: Alpes-Maritimes; P: Provence; CE: Cévennes; CO: Corsica. Patients: Anonymized name given to the patients. Sample WHO code: WHO code of the isolates; The MLMT profile of the samples indicated with * was already characterized by Hide et al [9]; n. d. = not defined. Y: Year of isolation. C F / H: Clinical form of the disease and/or host: VL–visceral leishmaniasis; IVL–Infant under 15 years with visceral leishmaniasis; CL–cutaneous leishmaniasis; MCL–muco-cutaneous leishmaniasis; RVL—New episode of leishmaniasis in VL patient; AC–asymptomatic carrier; CanL–canine leishmaniasis; CatL–leishmaniasis in cat; PHLE–sample isolated from phlebotomine sandfly; UK–unknown. Zymo: zymodeme of isolate. G: genotypes. P: population as defined by STRUCTURE.