Table 1. Summary of the NGS libraries of the larval oral inoculation experiment.

Sample ID	Treatment group	ENA sample accession	Total reads	A. mellifera OGS3, mRNA reads	Total DWV reads (Aligned to GenBank accession number NC˙004830)	DWV to actin mRNA (GB44311) coverage ratio	Total SBV reads (Aligned to GenBank accession number AF092924)	SBV to actin mRNA (GB44311) coverage ratio
1	Control	SAMEA2591288	9,691,343	6,842,703	7,555	0.047	28,541	0.201
2	Control	SAMEA2591289	10,630,145	6,204,592	6,210	0.049	4,009	0.036
3	DWV	SAMEA2591290	9,785,423	3,352,681	3,240,468	55.263	6,179	0.120
4	BV + DWV	SAMEA2591291	10,069,125	645,114	736,640	34.841	7,021,099	378.684
5	BV + DWV	SAMEA2591292	10,257,560	604,367	887,349	54.627	8,171,254	573.641