Table 3.

Comparison of basic quality measures of assembled and reference genomes of Daphnia pulex.

	Assembled Genome		Reference Genome [11]
Assembly	Contigs	Contigs used for peak calling and annotation	Contigs	Scaffolds
# contigs	17338	5572	19008	5191
Total length	85410271	66080228	158604366	197261574
GC (%)	40.74	41.08	40.76	40.77
N50	10601	13511	49250	642089
# N's per 100 kbp	0	0	1.33	19582.65