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. 2016 Jan 28;6:1531. doi: 10.3389/fmicb.2015.01531

Table 2.

Taxonomic classes (RefSeq) that are overrepresented in microbialites relative to the surrounding environment by ANOVA using STAMP.

Bacteria p-value (corr) Effect size Fil: Avg Rfreq (%) Filr: SD (%) MB: Avg Rfreq. (%) MB: SD (%) Sed: Avg Rfreq. (%) Sed: SD (%)
Acidobacteriia 1.96E-03 0.889 0.314 0.164 0.839 0.139 0 0
Acidobacteria (Unclassified) 8.34E-05 0.972 0.096 0.053 0.849 0.094 0 0
Alphaproteobacteria 4.52E-04 0.947 7.708 0.266 19.768 2.196 2.679 2.008
Chloroflexi (class) 9.30E-05 0.973 0.449 0.142 1.481 0.116 0 0
Deferribacteres (class) 1.13E-03 0.917 0.059 0.014 0.117 0.02 0 0
Deinococci 1.82E-03 0.892 0.335 0.131 0.613 0.081 0 0
Deltaproteobacteria 1.81E-04 0.961 2.151 0.933 7.85 0.448 0.398 0.563
Gemmatimonadetes 1.39E-03 0.904 0.208 0.16 0.797 0.114 0 0
Gloeobacteria 7.68E-05 0.972 0.056 0.038 0.36 0.03 0 0
Ktedonobacteria 1.49E-03 0.9 0.076 0.042 0.31 0.062 0 0
Solibacteres 1.16E-04 0.973 0.386 0.279 3.346 0.331 0 0
Thermomicrobia (class) 1.44E-03 0.905 0.058 0.03 0.481 0.111 0 0
Thermotogae (class) 5.03E-03 0.845 0.044 0.023 0.138 0.006 0.023 0.033

STAMP ANOVA tested significant differences between multiple groups (microbialite, sediments, and filters) using a post-hoc test (Tukey–Kramer at 0.95), an effect size (Eta-squared), a p-value (<0.01) and a multiple-test correction of Benjamini–Hochberg FDR. Results are for RefSeq classifications that significantly differed (p < 0.01) for microbialite over the surrounding environments (sediments and filters). Avg Rfreq, Average relative frequency; SD, Standard deviation; p-val corr, p-value ANOVA corrected; Unclass, Unclassified; MB, Microbialite; Sed, Sediment.

Avg Rfreq, Average relative frequency; SD, Standard deviation. P-val corr, p-value ANOVA corrected (By Benjamini–Hochberg FDR); Fil, Filter represents surrounding water; MB, Microbialite; Sed, Sediment.