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. 2016 Jan 28;7:41. doi: 10.3389/fmicb.2016.00041

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Copyright © 2016 Fan, Duan, Tong, Huang, Zhou, Wang, Zeng, Young and Xie.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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The scatter plot of KEGG pathways enriched for differential expression genes. Panel (A) shows up-regulated pathways. Panel (B) shows down-regulated pathways. The Y-axis is different KEGG pathway. The X-axis is the number of rich factor. The color of circles stands for the q-value of pathway. The range of q value is from 0 to 1. The size of circles stands for gene number. Some up-regulated genes associated to ribosome, protein export, bacterial secretion system, glycerophospholipid metabolism, and RNA degradation were enriched. Some down-regulated genes associated to siderophore non-ribosomal peptides and nitrotoluene degradation were enriched.