TABLE 1.
Detection of the copresence of bacteria and viruses in the diarrhea samples
| Sample identification |
C. difficile detection by: |
C. perfringens detection by 16S + MSS | Norovirus detection by: |
Sapovirus detection by: |
||||
|---|---|---|---|---|---|---|---|---|
| qPCR | 16S | MSS | qRT-PCR | MSS | qRT-PCR | MSS | ||
| CDAF.131.131 | +a | + | + | −b | − | − | − | − |
| CDAF.136.136 | + | + | + | − | − | − | + | − |
| CDAF.137.137 | + | + | − | − | − | − | − | + |
| CDAF.139.139 | + | − | + | − | − | − | − | − |
| CDAF.142.142 | + | + | + | − | − | − | − | − |
| CDAF.143.143 | + | + | + | − | + | + | − | − |
| CDAF.178.178 | + | + | + | − | + | + | − | − |
| CDAF.180.180 | + | + | + | − | − | − | − | − |
| CDAF.193.193 | + | + | − | − | − | − | − | − |
| CDAF.198.198 | + | − | + | − | − | + | − | − |
| CDAF.218.218 | + | + | + | − | − | − | − | − |
| CDAF.224.224 | + | + | + | − | − | − | − | − |
| CDAF.230.230 | + | + | + | − | − | − | − | − |
| CDAF.231.231 | + | + | + | − | + | − | − | − |
| CDAF.243.243 | + | + | + | − | + | − | − | − |
| CDAF.245.245 | + | + | + | − | − | − | − | − |
| CDAF.267.267 | + | + | + | − | − | − | − | − |
| CDAF.41949.A | + | + | + | + | + | + | − | − |
| CDAF.41951.C | + | + | + | − | − | − | + | + |
| CDAF.41953.E | + | + | + | − | − | − | − | − |
| CDAF.41955.G | + | + | + | − | − | − | − | − |
| CDAF.41958.J - C. difficile + Salmonella | + | + | − | − | − | − | − | − |
| CDAF.41950.B -NCc (medicine side effect) | − | +d | − | + | − | − | − | − |
| CDAF.41952.D-NC (inflammatory bowel disease) | − | − | − | + | − | − | − | − |
| CDAF.41954.F-NC (Campylobacter) | − | − | +d | − | − | − | + | + |
| CDAF.41956.H-NC (unknow cause) | − | − | − | − | − | − | − | − |
| CDAF.41957.I-NC (Salmonella) | − | +d | − | + | − | − | − | − |
a
+, Present in the sample.
b
−, Not present in the sample.
c
NC, negative control.
d
Detected by sequencing but not confirmed by 16S rRNA gene PCR.