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. 2016 Jan 28;90(4):1872–1879. doi: 10.1128/JVI.02387-15

TABLE 1.

Primers used for pBD cDNA construction and for introducing mutations into the PB1 gene of the mutant viruses

Purpose Primer(s) (5′–3′)a
Forward Reverse
PB2 amplification CCAGCAAAAGCAGGTCAAATATATTCA TTAGTAGAAACAAGGTCGTTTTTAAAT (DK/08), TTAGTAGAAACAAGGTCGTTTTTAAAC (CK/09)
PB1 amplification CCAGCAAAAGCAGGCAAACCATTTGAATG TTAGTAGAAACAAGGCATTTTTTCACG
PA amplification CCAGCAAAAGCAGGTACTGATCCAAA TTAGTAGAAACAAGGTACTTTTTTGGA
HA amplification CCAGCAAAAGCAGGGGTTCACTCTGTC (DK/08), CCAGCAAAAGCAGGGGTCCAATCTGTC (CK/09) TTAGTAGAAACAAGGGTGTTTTTAACTAC
NP amplification CCAGCAAAAGCAGGGTAGATAATCAC TTAGTAGAAACAAGGGTATTTTTCT
NA amplification CCAGCAAAAGCAGGAGTTCA TTAGTAGAAACAAGGAGT
M amplification CCAGCAAAAGCAGGTAGATGT TTAGTAGAAACAAGGTAGTTT
NS amplification CCAGCAAAAGCAGGGTGACAAAAACAT TTAGTAGAAACAAGGGTGTTTTTTA
CK/09 PB1D619N mutation GAAATGGGAATTGATGGATGAAAACTACCAGGGCAG CTGCCCTGGTAGTTTTCATCCATCAATTCCCATTTC
CK/09 PB1G622D mutation GGATGAAGACTACCAGGACAGACTGTGCAATCCTC GAGGATTGCACAGTCTGTCCTGGTAGTCTTCATCC
CK/09 PB1R635K mutation CTGAATCCATTCGTCAGCCATAAGGAAATTGAATCTGTC GACAGATTCAATTTCCTTATGGCTGACGAATGGATTCAG
CK/09 PB1D619N/G622D mutation GGATGAAAACTACCAGGACAGACTGTGCAATCCTC GAGGATTGCACAGTCTGTCCTGGTAGTTTTCATCC
a

The nucleotides that have been changed are underlined and in boldface type.