TABLE 4.
Similarities among the GALV strains in the LTRs and in the full genomes sequencesa
| Strain | LTRs (% identity) |
Full genome (% identity) |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GALV-X | SEATO* | SF-HOS | SEATO | Brain | Hall’s Island | WMV | GALV-X | SEATO* | SF-HOS | SEATO | Brain | Hall’s Island | WMV | |
| GALV-X | 84 | 100 | 83.5 | 80 | 82.9 | 80.8 | 87.6 | 99 | 87.1 | 88.2 | 88.3 | 90 | ||
| SEATO* | 75.2 | 84 | 100 | 87.7 | 87 | 90.3 | 87.6 | 87.9 | 98.7 | 91.4 | 91.5 | 89.6 | ||
| SF-HOS | 100 | 75.2 | 83.5 | 80 | 82.9 | 80.8 | 99 | 87.9 | 87.4 | 88.4 | 88.5 | 90.5 | ||
| SEATO | 69.6 | 89.5 | 69.6 | 84 | 88 | 81.9 | 87.1 | 98.7 | 87.4 | 90.9 | 91.1 | 89 | ||
| Brain | 79.5 | 74.5 | 79.5 | 69.9 | 93.2 | 79.4 | 88.2 | 91.4 | 88.4 | 90.9 | 97.7 | 89.9 | ||
| Hall’s Island | 82.5 | 78.9 | 82.5 | 73.1 | 93.2 | 81.6 | 88.3 | 91.5 | 88.5 | 91.1 | 97.7 | 89.9 | ||
| WMV | 80.8 | 72.4 | 80.8 | 68.9 | 79.4 | 81.5 | 90 | 89.6 | 90.5 | 89 | 89.9 | 89.9 | ||
a
The similarities are reported as percent nucleotide identities between nucleotide sequences. For the LTRs, the values above the diagonal represent the percent nucleotide identities among the 5′ LTR sequences of GALV strains, whereas the values below the diagonal represent the percent identities among the 3′ LTR sequences. GALV reference sequences from GenBank (SEATO, M26927, indicated by SEATO*; GALV-X, U60065) are included in the comparison.