Table 5. Publicly available gene expression time-course data sets of trauma patients who develop infections.
VAP, ventilator-associated pneumonia; VAT, ventilator-associated tracheobronchitis; N/A, not available.
| Data set | Year | Submitting author |
Paper reference number |
Control used here |
Condition used here |
Sample type used |
Platform |
n control |
n case |
Samples used here |
Time points present in data set (days) |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GSE6377 | 2008 | Cobb | 35 | None | ICU patients with eventual VAP |
Buffy coat | GPL201 | 0 | 11 | 99 | 1–21 |
| GSE12838 | 2008 | Cobb | N/A | None | ICU patients with eventual VAP |
Buffy coat and neutrophils |
GPL570 | 0 | 4 | 60 | 1–11 |
| E-MEXP-3001 | 2011 | Lopez | 23 | None | ICU patients with acquired VAP or VAT |
Whole blood | A-Agil-28 (GPL6480) |
0 | 8 | 56 | 1–7 |