Table 5.
Annotation of genes differentially expressed in MD52ne at 15 and 20 DPA fiber
| Gene ID | Tair 10 ID | Description | Fold (MD52ne/MD90ne) | |
|---|---|---|---|---|
| 15 DPA | 20 DPA | |||
| Response to hormone stimulus | ||||
| Gh_A08G0989 | AT4G11280 | 1-aminocyclopropane-1-carboxylic acid synthase 6 (ACC6) | 6.87 | 2.40 |
| Gh_A07G0774 | AT1G05010 | 1-aminocyclopropane-1-carboxylate oxidase 4 (ACO4) | 6.35 | 4.28 |
| Gh_A05G0085 | AT2G25490 | EIN3-binding F box protein 1 (EBF1) | 5.01 | 2.28 |
| Gh_A09G1760 | AT4G17500 | Ethylene responsive element binding factor 1 | 2.45 | 2.60 |
| Gh_A12G1554 | AT1G13260 | Related to ABI3/VP1 1 | 4.21 | 4.76 |
| Gh_D11G0427 | AT5G07580 | Integrase-type DNA-binding superfamily protein | 7.92 | 2.64 |
| Gh_A11G2242 | AT5G43700 | AUX/IAA transcriptional regulator family protein | 10.19 | 7.99 |
| Gh_A11G0443 | AT2G14960 | Auxin-responsive GH3 family protein | 2.90 | 0.26 |
| Gh_A08G1509 | AT4G16780 | Homeobox protein 2 | 5.01 | 2.40 |
| Gh_D08G2557 | AT5G57050 | Protein phosphatase 2C family protein | 3.56 | 2.12 |
| Gh_D06G0657 | AT4G26080 | Protein phosphatase 2C family protein | 2.68 | 2.24 |
| Gh_D09G0145 | AT5G15230 | GAST1 protein homolog 4 | 3.96 | 3.19 |
| Gh_A06G0128 | AT5G25900 | GA requiring 3 | 0.42 | 0.44 |
| Gh_D06G0417 | AT1G01720 | NAC transcriptional regulator | 2.72 | 3.23 |
| Gh_D01G0514 | AT4G27410 | NAC transcriptional regulator | 2.58 | 2.09 |
| Inter & intra-cellular singaling cascade | ||||
| Gh_D08G0203 | AT5G48940 | Leucine rich repeat receptor-like kinase (LRR RLK) | 376.83 | 701.62 |
| Gh_D12G0208 | AT1G49740 | PLC-like phosphodiesterases superfamily protein | 38.86 | 6.53 |
| Gh_A11G1809 | AT1G13680 | PLC-like phosphodiesterases superfamily protein | 5.13 | 4.88 |
| Gh_D11G0427 | AT5G07580 | Integrase-type DNA-binding superfamily protein | 7.92 | 2.64 |
| Gh_A05G2005 | AT5G12480 | Calmodulin-domain protein kinase 7 | 12.98 | 15.75 |
| Gh_A07G0928 | AT5G59010 | Protein kinase protein with tetratricopeptide repeat domain | 4.75 | 2.48 |
| Gh_A02G1701 | AT2G17220 | Protein kinase superfamily protein | 3.77 | 2.06 |
| Gh_A03G0393 | AT5G59010 | Protein kinase protein with tetratricopeptide repeat | 3.11 | 2.71 |
| Gh_D10G0338 | AT2G33170 | Leucine-rich repeat receptor-like kinase | 2.18 | 2.33 |
| Gh_D05G1232 | AT1G11300 | Protein serine/threonine kinases | 0.41 | 2.94 |
| Gh_D12G0893 | AT1G54610 | Protein kinase superfamily protein | 0.39 | 0.18 |
| Gh_D01G1037 | AT4G20140 | Leucine-rich repeat transmembrane kinase | 0.34 | 0.30 |
| Gh_A12G0190 | AT1G49820 | S-methyl-5-thioribose kinase | 0.20 | 0.27 |
| Gh_A03G0234 | AT2G30500 | Kinase interacting (KIP1-like) family protein | 0.00 | 0.01 |
| Gh_D12G2621 | AT3G22370 | Alternative oxidase 1A | 0.03 | 0.17 |
| Cell wall modification | ||||
| Gh_D13G0786 | AT1G26770 | Expansin A10 | 3.72 | 2.14 |
| Gh_A04G0707 | AT2G39700 | Expansin A4 | 3.67 | 4.21 |
| Gh_A05G1180 | AT3G14310 | Pectin methylesterase 3 (PME3) | 3.41 | 6.70 |
| Gh_A03G1432 | AT4G03210 | Xyloglucan endotransglucosylase/hydrolase 9 (XET9) | 2.56 | 1.03 |
| Gh_A11G0768 | AT4G28850 | Xyloglucan endotransglucosylase/hydrolase 9 (XET26) | 3.97 | 1.34 |
| Gh_D08G1309 | AT4G02280 | Sucrose synthase 3 (Sus3) | 4.70 | 1.00 |
| Gh_A07G0665 | AT5G37180 | Sucrose synthase 5 (Sus5) | 13.97 | 0.94 |
| Gh_D12G0298 | AT3G29810 | COBRA-like protein 2 precursor | 1.23 | 11.09 |
| Gh_A06G0439 | AT3G12500 | Chitinase/ Chitinase-like (CHI/CTL) | 1.00 | 16.63 |
| Gh_D06G0479 | AT3G12500 | Chitinase/ Chitinase-like (CHI/CTL) | 1.84 | 10.61 |
| Lipid localization | ||||
| Gh_A11G0232 | AT2G45180 | Lipid-transfer protein | 27.06 | 100.50 |
| Gh_D07G1618 | AT5G48485 | Lipid-transfer protein | 3.54 | 2.78 |
| Gh_A05G0073 | AT2G10940 | Lipid-transfer protein | 4.66 | 4.32 |
| Gh_D13G1979 | AT4G30950 | Fatty acid desaturase 6 | 2.42 | 2.44 |
| Transcriptional regulation of cellular metabolic process | ||||
| Gh_D06G1433 | AT1G29160 | Dof-type zinc finger DNA-binding protein | 21.26 | 3.01 |
| Gh_A13G1525 | AT1G22490 | bHLH DNA-binding protein | 10.53 | 7.80 |
| Gh_D08G0923 | AT5G57660 | CONSTANS-like 5 | 4.64 | 2.46 |
| Gh_D03G1189 | AT1G07530 | SCARECROW-like 14 | 2.65 | 2.71 |
| Gh_A09G0414 | AT5G52510 | SCARECROW-like 8 | 2.07 | 2.22 |
| Gh_D06G1966 | AT1G80840 | WRKY DNA-binding protein 40 | 5.40 | 3.25 |
| Gh_D12G1243 | AT1G13960 | WRKY DNA-binding protein 4 | 2.35 | 3.28 |
| Gh_D09G1456 | AT5G56270 | WRKY DNA-binding protein 2 | 2.02 | 2.29 |
| Gh_A12G1763 | AT1G57820 | Zinc finger (C3HC4-type RING finger) protein | 4.32 | 6.50 |
| Gh_A01G1274 | AT5G50570 | Squamosa promoter-binding transcription factor | 4.67 | 3.05 |
| Gh_A11G2041 | AT1G69560 | MYB protein 105 | 3.66 | 2.51 |
| Gh_A12G1244 | AT4G21440 | MYB-like 102 | 0.21 | 0.46 |
| Gh_A04G0781 | AT2G38250 | Homeodomain-like superfamily protein | 3.67 | 2.29 |
| Gh_A08G1509 | AT4G16780 | Homeobox protein 2 | 5.01 | 2.40 |
| Gh_A06G0833 | AT4G32880 | Homeobox gene 8 | 2.57 | 2.12 |
| Gh_D08G2178 | AT1G09250 | Basic helix-loop-helix (bHLH) DNA-binding protein | 5.23 | 2.38 |
| Gh_D12G2057 | AT5G46910 | Transcription factor jumonji (jmj) zinc finger (C5HC2 type) | 2.18 | 2.11 |
| Gh_D11G0427 | AT5G07580 | Integrase-type DNA-binding superfamily protein | 7.92 | 2.64 |
| Gh_A10G0516 | AT3G13890 | MYB protein 26 | 9.28 | 0.87 |
| Gh_A09G1074 | AT5G12870 | MYB protein 46 | 7.81 | 1.03 |