Table 1.
Significant SNPs for stillbirth and associated genes
| SNP | Chr | Position (bp) | QTL | Gene | Distance (bp)a |
|---|---|---|---|---|---|
| BGIS0003207 | 1 | 183,948,686 | – | FEM1B | 14,336 |
| PIAS1 | Inside | ||||
| ITGA11 | 6384 | ||||
| MARC0007670 | 1 | 193,689,396 | – | – | – |
| M1GA0001259 | 1 | 204,647,860 | QTL 1 | SAMD4A | 6863 |
| ALGA0007251 | 1 | 204,871,282 | LOC102168145, WDHD1, SOCS4, MAPK1IP1L, LGALS3 and DLGAP5 | Inside | |
| MARC0056056 | 1 | 204,934,912 | |||
| H3GA0003422 | 1 | 205,020,361 | |||
| ASGA0010665 | 2 | 87,274,373 | – | F2R | 5412 |
| LOC102165085/IQGAP2-like | 30,878 | ||||
| ALGA0014165 | 2 | 87,624,560 | – | LOC100520366 | Inside |
| MARC0000488 | 2 | 87,728,463 | – | – | – |
| ALGA0014249 | 2 | 88,859,718 | – | – | – |
| ALGA0018674 | 3 | 47,957,752 | – | NPHP1 | Inside |
| LOC102166895 | 9013 | ||||
| ASGA0028841 | 6 | 82,315,974 | – | PTP4A2 | 19,505 |
| ASGA0070042 | 15 | 90,388,740 | – | – | – |
| ALGA0086491 | 15 | 111,088,143 | – | LOC100738946/HECW2 | Inside |
| ASGA0070213 | 15 | 111,116,466 | – | LOC100738946/HECW2 | Inside |
| ASGA0072736 | 16 | 26,077,922 | – | – | – |
| H3GA0049633 | 17 | 61,860,123 | – | CYP24A1 | 31,229 |
| ASGA0077857 | 17 | 61,889,054 | – | CYP24A1 | 2298 |
The table shows significant SNPs, their positions in base pairs (bp) on the swine chromosome (Chr), the QTL region, associated genes (genes located in a QTL region or in an interval of 32.5 Kbp around each QTL region or SNP), followed by their distance in base pairs of a single marker or in relation to the first or last SNP of the region
aGene location in relation to the QTL region or to the single SNP