Table 2.
Significant SNPs for number of teats and associated genes
| SNP | Chr | Position (bp) | QTL | Gene | Distance (bp)a |
|---|---|---|---|---|---|
| ALGA0004864 | 1 | 99,713,078 | – | – | – |
| ALGA0012925 | 2 | 34,084,545 | – | – | – |
| ALGA0012930 | 2 | 34,177,927 | – | – | – |
| ALGA0013045 | 2 | 40,181,443 | – | LOC102167107 | 20,750 |
| MARC0055904 | 2 | 40,328,584 | – | SLC17A6 | Inside |
| ASGA0032215 | 7 | 31,600,286 | QTL 1 | KLHL31 | 978 |
| H3GA0020592 | 7 | 31,714,979 | LOC102166539, LOC102166618, GCLC, LOC102167236 and LOC102167364 | Inside | |
| MARC0010879 | 7 | 31,869,398 | |||
| MARC0098266 | 7 | 31,945,954 | KHDRBS2 | 12,332 | |
| ALGA0039995 | 7 | 32,047,280 | QTL 2 | KHDRBS2 | Inside |
| ALGA0040000 | 7 | 32,134,452 | |||
| ASGA0032254 | 7 | 32,166,462 | |||
| ASGA0032255 | 7 | 32,192,051 | |||
| MARC0043689 | 7 | 32,252,888 | |||
| INRA0024655 | 7 | 32,313,430 | |||
| ASGA0032266 | 7 | 32,543,114 | – | – | |
| ALGA0040040 | 7 | 32,915,748 | – | PRIM2 | Inside |
| ASGA0034811 | 7 | 91,149,363 | – | – | – |
| H3GA0022644 | 7 | 102,901,720 | – | PTGR2 | 27,013 |
| MARC0038565 | 7 | 103,495,170 | – | VRTN | 28,094 |
| SYNDIG1L | 5675 | ||||
| MARC0048752 | 7 | 103,789,642 | QTL 3 | AREL1 | 5892 |
| M1GA0010654 | 7 | 103,796,933 | FCF1, YLPM1, PROX2, DLST and RPS6KL1 | Inside | |
| ALGA0043962 | 7 | 103,816,521 | |||
| H3GA0022664 | 7 | 103,910,821 | |||
| ASGA0035527 | 7 | 103,933,199 | |||
| DIAS0001088 | 7 | 103,960,033 | |||
| M1GA0010658 | 7 | 103,999,954 | – | LOC102167367 | 26,610 |
| PGF | Inside | ||||
| ASGA0035536 | 7 | 104,108,293 | – | MLH3 | 16,923 |
| LOC102167860 | 5573 | ||||
| ACYP1 | Inside | ||||
| ZC2HC1C | 1044 | ||||
| NEK9 | 11,806 | ||||
| ALGA0122954 | 7 | 104,598,913 | – | JDP2 | Inside |
| LOC100624918/FLVCR2 | 8951 | ||||
| ASGA0035556 | 7 | 105,224,235 | – | TGFB3 | 14,323 |
| IFT43 | Inside | ||||
| MARC0093074 | 8 | 50,223,543 | QTL 1 | LOC102166479, C8H4orf45 and RAPGEF2 | Inside |
| H3GA0024861 | 8 | 50,329,649 | |||
| H3GA0024862 | 8 | 50,359,681 | |||
| H3GA0024868 | 8 | 50,479,231 | |||
| H3GA0052920 | 8 | 50,503,562 | |||
| ASGA0038804 | 8 | 50,537,893 | |||
| DRGA0008588 | 8 | 51,580,681 | – | – | – |
| MARC0077695 | 8 | 53,929,233 | – | – | – |
| ALGA0047895 | 8 | 55,647,917 | QTL 2 | LOC102159670 | Inside |
| H3GA0024880 | 8 | 55,670,008 | |||
| H3GA0024879 | 8 | 55,749,069 | |||
| ALGA0047896 | 8 | 56,064,449 | |||
| ASGA0038818 | 8 | 56,175,366 | – | – | – |
| H3GA0024884 | 8 | 56,642,918 | QTL 3 | – | – |
| ASGA0038820 | 8 | 56,673,496 | |||
| H3GA0024882 | 8 | 56,695,265 | |||
| ASGA0038822 | 8 | 56,764,454 | |||
| ALGA0047901 | 8 | 56,805,057 | |||
| MARC0013221 | 8 | 57,262,741 | – | LOC100519853/ZNF320 | Inside |
| LOC102160850 | 692 | ||||
| INRA0029832 | 8 | 58,466,955 | QTL 4 | LOC102165777, NMU, LOC102166140, PDCL2, LOC102166866, CLOCK and LOC100523623/TMEM165 | Inside |
| ALGA0047932 | 8 | 58,557,889 | |||
| ALGA0047933 | 8 | 58,625,849 | |||
| M1GA0011944 | 8 | 58,807,576 | SRD5A3 | 13,606 | |
| MARC0000554 | 8 | 67,026,060 | – | LOC100737487/EPHA5-like | Inside |
| ASGA0085207 | 8 | 69,065,977 | QTL 5 | – | – |
| MARC0020237 | 8 | 69,070,421 | |||
| MARC0095739 | 8 | 69,146,481 | |||
| ALGA0103392 | 8 | 69,146,919 | |||
| ALGA0102491 | 8 | 69,215,722 | |||
| ALGA0066725 | 12 | 50,281,949 | QTL 1 | METTL16, PAFAH1B1, LOC102165360, CLUH, LOC102165602/CCDC92 | Inside |
| ASGA0054883 | 12 | 50,340,265 | |||
| MARC0027202 | 12 | 50,489,072 | |||
| ALGA0066740 | 12 | 50,578,018 | |||
| DIAS0001557 | 12 | 55,962,023 | – | PFAS | 11,951 |
| RANGRF | Inside | ||||
| SLC25A35 | 163 | ||||
| ARHGEF15 | 8954 | ||||
| ODF4 | 31,445 | ||||
| ASGA0062949 | 14 | 43,688,399 | – | TRPV4 | 4852 |
| FAM222A | 4716 |
The table shows significant SNPs, their positions in base pairs (bp) on the swine chromosome (Chr), the QTL region, associated genes (genes located in a QTL region or in an interval of 32.5 Kbp around each QTL region or SNP), followed by their distance in base pairs of a single marker or in relation to the first or last SNP of the region
aGene location in relation to the QTL region or to the single SNP