Table 9.
Nine PubchemFP fragment alerts and representative structures
No. | Fingerprint | Fragment | Description | Bit substructure | R 2adj change | Cramer’s V | Representative structure |
---|---|---|---|---|---|---|---|
Positive fragment alerts | |||||||
1 | PubchemFP400 |
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Detailed atom neighborhoods | N(~ H)(:C)(:C) | 0.00086 | 0.15810 |
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2 | PubchemFP359 |
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Simple atom nearest neighbors | C(~ C)(:N)(:N) | 0.00162 | 0.15641 |
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4 | PubchemFP770 |
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Complex SMARTS patterns | Nc1c(N)cccc1 | 0.00167 | 0.14722 |
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5 | PubchemFP833 |
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Complex SMARTS patterns | NC1C(N)CCCC1 | 0.00100 | 0.14504 |
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6 | PubchemFP527 |
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Simple SMARTS patterns | C:C:N-[#1] | 0.00036 | 0.13989 |
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Negative fragment alerts | |||||||
1 | PubchemFP15 | Counts of N ≥ 2 | Hierarchic element counts | ≥2 N | 0.00174 | 0.16108 |
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2 | PubchemFP442 |
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Detailed atom neighborhoods | C(–C)(=N) | 0.00024 | 0.15474 |
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3 | PubchemFP418 |
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Simple SMARTS patterns | C=N | 0.00094 | 0.13903 |
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PubchemFP14 | Counts of N ≥ 1 | Hierarchic element counts | ≥1 N | 0.00002 | 0.13650 |
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