Table 1.
MYC2-, MYC3-, and MYC4-regulated genes affected by mutation of JAZ7 in darkness
| Locus ID | MYCs motif (CACNTG) | Col-0/myc234 a | WT dark/jaz7 dark | WT light/jaz7 light | Gene name | Gene included in functional category of: | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Fold change | P value | Fold change | P value | Fold change | P value | Indole derivative metabolism | Glucosinolate metabolism | Sulphur metabolism | Response to JA stimulus | Oxidation– reduction | |||
| At5g05730 | ✓ | 2.27 | 1.47E–04 | –4.28 | 7.75E–06 | –1.05 | 9.22E–01 | ASA1 | ✓ | ||||
| At1g25220 | ✓ | 2.25 | 2.95E–02 | –1.83 | 1.17E–02 | –1.33 | 5.93E–01 | ASB1 | ✓ | ✓ | |||
| At4g27070 | ✓ | 2.03 | 7.95E–03 | –2.37 | 1.39E–02 | 1.05 | 9.50E–01 | TSB2 | ✓ | ||||
| At4g39950b | ✓ | 11.42 | 6.17E–06 | –4.06 | 5.95E–04 | –1.08 | 9.52E–01 | CYP79B2 | ✓ | ✓ | ✓ | ||
| At1g24100b | ✓ | 3.93 | 5.27E–06 | –2.21 | 9.39E–03 | 1.05 | 8.49E–01 | UGT74B1 | ✓ | ✓ | ✓ | ||
| At4g30530 | ✓ | 3.22 | 1.90E–05 | –1.81 | 2.43E–02 | –1.38 | 3.09E–01 | GGP1 | ✓ | ✓ | ✓ | ||
| At1g74100b | ✓ | 4.12 | 4.52E–06 | –2.28 | 2.64E–02 | –1.76 | 5.14E–01 | SOT16 | ✓ | ✓ | ✓ | ✓ | |
| At1g18590 | ✓ | 15.50 | 1.18E–07 | –1.97 | 2.52E–02 | –2.06 | 1.80E–02 | SOT17 | ✓ | ✓ | ✓ | ||
| At4g39940b | ✓ | 35.27 | 5.54E–08 | –2.17 | 5.19E–03 | –1.33 | 1.04E–01 | APK2,AKN2 | ✓ | ✓ | ✓ | ||
| At4g04610b | ✓ | 4.21 | 1.18E–04 | –8.31 | 4.35E–05 | –1.37 | 4.46E–01 | APR1, PAPS reductase | ✓ | ✓ | ✓ | ✓ | |
| At3g22890 | ✓ | 1.99 | 1.14E–03 | –2.32 | 6.40E–03 | 1.26 | 3.45E–01 | APS1 | ✓ | ✓ | ✓ | ||
| At1g51760 | ✓ | 1.85 | 6.39E–04 | –2.22 | 6.61E–03 | –2.66 | 6.22E–02 | IAR3, JR3 | ✓ | ✓ | |||
| At5g01500 | 2.93 | 3.21E–05 | –3.61 | 1.52E–02 | 1.61 | 5.60E–01 | TAAC/PAPST1 | ✓ | ✓ | ||||
| At4g29700 | ✓ | 3.59 | 5.24E–05 | –2.06 | 2.05E–02 | –1.38 | 1.98E–01 | Alkaline- phosphatase-like protein | ✓ | ✓ | |||
| At5g07010 | ✓ | 2.34 | 2.62E–04 | –2.98 | 1.18E–04 | 1.27 | 9.44E–01 | ST2A | ✓ | ✓ | |||
| At2g06050 | ✓ | 3.36 | 1.55E–05 | –2.61 | 2.51E–02 | –1.19 | 5.47E–01 | OPR3 | ✓ | ✓ | |||
| At2g39030 | ✓ | 7.74 | 3.10E–05 | –2.96 | 1.32E–03 | –1.46 | 3.73E–01 | NATA1 | ✓ | ||||
| At3g27810 | ✓ | 1.89 | 2.43E–03 | –3.19 | 2.92E–03 | –3.36 | 4.21E–01 | ATMYB21, ATMYB3, MYB21 | ✓ | ||||
| At1g61120 | ✓ | 5.22 | 2.65E–05 | –4.81 | 1.99E–04 | –1.55 | 4.58E–01 | TPS04 | ✓ | ||||
| At3g51450 | ✓ | 1.91 | 2.00E–03 | –2.37 | 3.03E–02 | –1.39 | 2.13E–01 | Calcium-dependent phosphotriesterase | ✓ | ||||
| At1g06620 | ✓ | 2.53 | 5.47E–05 | –2.31 | 3.75E–03 | –1.35 | 6.23E–01 | 2-Oxoglutarate- dependent dioxygenase | ✓ | ✓ | |||
| At2g38240 | ✓ | 4.47 | 6.37E–05 | –2.70 | 2.68E–04 | –1.43 | 8.94E–01 | Oxoglutarate/ iron-dependent oxygenase | ✓ | ||||
| At4g20860 | ✓ | 2.29 | 1.74E–03 | –3.35 | 2.97E–03 | –1.77 | 8.03E–01 | FAD-binding Berberine protein | |||||
| At1g74010 | 2.39 | 9.69E–03 | –2.17 | 1.29E–02 | –1.12 | 9.35E–01 | Calcium-dependent phosphotriesterase | ||||||
| At4g24350 | ✓ | 1.92 | 3.88E–04 | –2.69 | 2.99E–02 | –1.49 | 3.01E–02 | Phosphorylase | |||||
| At3g03240 | ✓ | 1.94 | 1.52E–03 | –1.95 | 4.18E–02 | 1.20 | 8.70E–01 | α/β-Hydrolases | |||||
| At2g25730 | ✓ | 1.86 | 1.27E–02 | –1.87 | 1.23E–02 | –1.29 | 6.89E–01 | Unknown protein | |||||
| At5g40210 | ✓ | 2.43 | 4.17E–04 | –2.48 | 1.85E–03 | 1.39 | 3.06E–02 | Nodulin MtN21 /EamA-like transporter | |||||
Bold values represent statistically significant changes (fold change ≥1.8 and P≤0.05).
a Data from Schweizer et al. (2013).
b The genes were reported with MYC2 bound in the promoter region by ChIP-seq (Schweizer et al., 2013).