Table 2.
Process Networks most enriched in genes up 3-fold (p<0.05) in OVE-GFP podocytes.a
Rank | Process Network | Network Objects Increased 3X / Total Network Size | P- Value | Network Objects Increased 3X |
---|---|---|---|---|
1 | Inflammation_Complement system | 7/73 | 0.00 | Clusterin, C5AR, C3dg, C3, iC3b, C3a, C3b |
2 | Cell adhesion_Cell junctions | 7/162 | 0.00 | Occludin, Desmoglein 2, Claudin-7, Keratin 18, Keratin 8/18, E-cadherin, Keratin 8 |
3 | Cytoskeleton_Intermediate filaments | 5/81 | 0.00 | NEFL, NEFM, Keratin 18, Keratin 8/18, Keratin 8 |
4 | Inflammation_Innate inflammatory response | 7/181 | 0.00 | C5AR, β-defensin 1, IL-1F6, C3, C3a, C3b, COX-2 (PTGS2) |
5 | Chemotaxis | 7/137 | 0.00 | Gα(q)-GPCRs, Gα(i)-GPCRs, C5AR, Osteopontin, CXCL1, CXCL16, CXCL2 |
6 | Immune response Phagocytosis | 6/222 | 0.00 | APOB, C3, C3b, C3dq, iC3b, LDL |
7 | Development Neurogenesis Axonal Guidance | 6/230 | 0.02 | Calcyclin, NEFL, NEFM, Neuropilin-1, Semaphorin 3C, SPOCK2 |
8 | Immune response Phagosome in antigen presentation | 6/243 | 0.02 | C3, C3dq, Cathepsin S, HLA-DQA1, iC3b, MHC classII |
9 | Development Cartilage development | 3/66 | 0.02 | Activin beta A, Collagen XII, MGP |
10 | Cell adhesion_Leucocyte chemotaxis | 6/205 | 0.03 | Gα(q)-GPCRs, Gα(i)-GPCRs, MHC class II, CXCL1,CXCL16 |
a Process Networks are network models created by Metacore of main cellular processes based on GO-processes and pathway maps. The P-value column indicates the probability calculated by Metacore software of obtaining the degree of overlap between the set of objects in the Network and the set of OVE-GFP genes increased 3 fold.