Table 1.
List of isolates recovered in Eurotiomycetes (Chaetothyriomicetidae). The isolates are identified by their DNA extraction numbers. Number of the original lichen thallus (growth medium of inoculation), name of the lichen, name of the associated lichenicolous fungus, culture collection number and the newly published NCBI accession numbers are reported. Samples in bold are those selected as representatives in the analysis of Fig. 1. The affiliation (clade name) of the other isolates is reported based on the initial analysis including all the isolates. Dash (−) indicate loss of culture due to unsuccessful subsequent growth
| Lichen thallus ID (medium name) | Lichen species | Lichenicolous fungus species | Cultured fungus DNA extraction N. | Culture collection N. | nucLSU | nucSSU | mt-SSU | clade ID |
|---|---|---|---|---|---|---|---|---|
| A46 (LBM) | Tephromela atra | Taeniolella atricerebrina | A573 | LMCC0184 | KT263034 | KT263047 | KT263060 | clade I |
| A46 (SAB) | Tephromela atra | Taeniolella atricerebrina | A589 | LMCC0197 | KT263035 | KT263048 | KT263061 | clade I |
| A135 (KGA) | Lecanora intricata | Muellerella - Li | A515 | LMCC0136 | KT263033 | KT263046 | KT263059 | clade I |
| A343 (LBM) | Lecanora polytropa | Lichenoconium lecanorae | A859 | LMCC0208 | KT263036 | KT263049 | KT263062 | clade I |
| A343 (SAB) | Lecanora polytropa | Lichenoconium lecanorae | A860 | LMCC0233 | KT263037 | KT263050 | KT263063 | clade I |
| A343 (SAB) | Lecanora polytropa | Lichenoconium lecanorae | A861 | LMCC0234 | KT263038 | KT263051 | KT263064 | clade I |
| A343 (KGA) | Lecanora polytropa | Lichenoconium lecanorae | A862 | LMCC0235 | KT263039 | KT263052 | KT263065 | clade I |
| A343 (TM) | Lecanora polytropa | Lichenoconium lecanorae | A893 | LMCC0217 | KT263040 | KT263053 | KT263066 | clade I |
| A343 (LBM) | Lecanora polytropa | Lichenoconium lecanorae | A916 | LMCC0265 | KT263041 | KT263054 | KT263067 | clade I |
| A343 (TM) | Lecanora polytropa | Lichenoconium lecanorae | A921 | LMCC0266 | KT263042 | KT263055 | KT263068 | clade I |
| A343 (MY) | Lecanora polytropa | Lichenoconium lecanorae | A922 | LMCC0267 | KT263043 | KT263056 | KT263069 | clade I |
| A343 (KGA) | Lecanora polytropa | Lichenoconium lecanorae | A936 | LMCC0276 | KT263044 | KT263057 | KT263070 | clade I |
| A666 (SAB) | Rhizocarpon geographicum | Endococcus macrosporus | A1022 | LMCC0346 | KT263045 | KT263058 | KT263071 | clade I |
| A97 (KGA) | Rhizocarpon geographicum | Muellerella - Rh | A944 | LMCC0283 | KT263072 | KT263094 | KT263110 | clade II |
| A97 (KGA) | Rhizocarpon geographicum | Muellerella - Rh | A994 | LMCC0332 | KT263074 | – | KT263112 | clade II |
| A263 (SAB) | Rhizocarpon geographicum | Muellerella - Rh | A993 | LMCC0331 | KT263073 | KT263095 | KT263111 | clade II |
| A385 (TMY) | Rhizocarpon geographicum | Muellerella - Rh | A1003 | LMCC0364 | KT263075 | – | KT263113 | clade II |
| A385 (MY) | Rhizocarpon geographicum | Muellerella - Rh | A1015 | LMCC0340 | KT263076 | KT263096 | KT263114 | clade II |
| A46 (SAB) | Tephromela atra | T. atricerebrina (+ Miutoexcipula tephromelae ) | A528 | LMCC0148 | KT263088 | KT263104 | KT263123 | clade III |
| Tephromela atra | Lichenodiplis lecanorae | L1858 | – | KT263086 | KT263100 | KT263118 | clade III | |
| Tephromela atra | Lichenodiplis lecanorae | L1860 | LMCC0513 | KT263087 | KT263101 | KT263119 | clade III | |
| Tephromela atra | Muellerella atricola | L1992 | LMCC0066 | KT263083 | – | KT263120 | clade III | |
| Tephromela atra | Muellerella atricola | L1993 | LMCC0487 | KT263084 | KT263102 | KT263121 | clade III | |
| Tephromela atra | Muellerella atricola | L1994 | LMCC0515 | KT263085 | KT263103 | KT263122 | clade III | |
| A64 (TM) | Schaereria fuscocinerea | Endococcus perpusillus | A511 | LMCC0132 | KT263126 | KT263171 | KT263215 | – |
| A64 (LBM) | Schaerera fuscocinerea | Endococcus perpusillus | A570 | LMCC0181 | KT263158 | KT263202 | KT263246 | – |
| A65 (TM) | Lecanora polytropa | Muellerella - Lp | A891 | LMCC0253 | KT270616 | KT270704 | KT270786 | – |
| A72 (SAB) | Lecanora polytropa | Carbonea supersparsa | A514 | LMCC0135 | KT263128 | KT263173 | KT263217 | – |
| A100 (MY) | Umbilicaria cylindrica | Stigmidium gyrophorarum | A584 | LMCC0193 | KT263164 | KT263208 | KT263252 | – |
| A198 (KGA) | Lecanora polytropa | Muellerella - Lp | A961 | LMCC0311 | KT270661 | – | KT270830 | – |
| A198 (KGA) | Lecanora polytropa | Muellerella - Lp | A1010 | LMCC0367 | KT263332 | KT263365 | KT263397 | – |
| A267 (KGA) | Aspicilia | Endococcus verrucosus | A885 | LMCC0248 | KT270614 | KT270702 | KT270784 | – |
| A267 (TM) | Aspicilia | Endococcus verrucosus | A903 | LMCC0223 | KT270624 | KT270712 | KT270794 | – |
| A267 (TM) | Aspicilia | Endococcus verrucosus | A911 | LMCC0230 | KT270629 | KT270717 | KT270799 | – |
| A267 (TM) | Aspicilia | Endococcus verrucosus | A949 | LMCC0286 | KT270653 | KT2707238 | KT270822 | – |
| A319 (TM) | Lecidea sp. | Muellerella pygmaea | A873 | LMCC0242 | KT270602 | KT270690 | KT270772 | – |
| A319 (SAB) | Lecidea sp. | Muellerella pygmaea | A875 | LMCC0264 | KT270604 | KT270692 | KT270774 | – |
| A329 (TM) | Aspicilia | Endococcus verrucosus | A924 | LMCC0261 | KT270635 | KT270724 | KT270804 | – |
| A329 (LBM) | Aspicilia | Endococcus verrucosus | A939 | LMCC0278 | KT270644 | – | KT270813 | – |
| A347 (TM) | Lecidea lapicida | Cecidonia umbonella | A865 | LMCC0238 | KT270594 | KT270682 | KT270764 | – |
| A347 (KGA) | Lecidea lapicida | Cecidonia umbonella | A866 | LMCC0239 | KT270595 | KT270683 | KT270765 | – |
| A390 (LBM) | Rhizocarpon geographicum | Endococcus macrosporus | A956 | LMCC0292 | KT270658 | KT270742 | KT270827 | – |
| A440 (MY) | Tephromela atra | Muellerella atricola | A1053 | LMCC0385 | KT263356 | KT263388 | KT263420 | – |
| A23 (TM) | Lecanora intricata | Muellerella - Li | A989 | LMCC0330 | KT270678 | KT270760 | KT270847 | clade IV |
| A65 (TM) | Lecanora polytropa | Muellerella - Lp | A516 | LMCC0137 | KT263130 | KT263174 | KT263218 | clade IV |
| A65 (TM) | Lecanora polytropa | Muellerella - Lp | A522 | LMCC0142 | KT263134 | KT263178 | KT263222 | clade IV |
| A65 (LBM) | Lecanora polytropa | Muellerella - Lp | A531 | LMCC0150 | KT263140 | KT263184 | KT263228 | clade IV |
| A65 (SAB) | Lecanora polytropa | Muellerella - Lp | A532 | LMCC0151 | KT263141 | KT263185 | KT263229 | clade IV |
| A65 (MY) | Lecanora polytropa | Muellerella - Lp | A539 | LMCC0157 | KT263146 | KT263190 | KT263234 | clade IV |
| A65 (TM) | Lecanora polytropa | Muellerella - Lp | A541 | LMCC0158 | KT263147 | KT263191 | KT263235 | clade IV |
| A65 (SAB) | Lecanora polytropa | Muellerella - Lp | A547 | – | KT263151 | KT263195 | KT263239 | clade IV |
| A65 (LBM) | Lecanora polytropa | Muellerella - Lp | A548 | LMCC0163 | KT263152 | KT263196 | KT263240 | clade IV |
| A84 (MY) | Lecanora polytropa | Lichenoconium lecanorae | A517 | LMCC0138 | KT263131 | KT263175 | KT263219 | clade IV |
| A84 (TM) | Lecanora polytropa | Lichenoconium lecanorae | A520 | LMCC0140 | KT263132 | KT263176 | KT263220 | clade IV |
| A84 (TM) | Lecanora polytropa | Lichenoconium lecanorae | A533 | LMCC0191 | KT263142 | KT263186 | KT263230 | clade IV |
| A84 (LBM) | Lecanora polytropa | Lichenoconium lecanorae | A909 | LMCC0228 | KT270628 | KT270716 | KT270798 | clade IV |
| A135 (TM) | Lecanora polytropa | Muellerella - Lp | A950 | LMCC0287 | KT270654 | KT270739 | KT270823 | clade IV |
| A237 (LBM) | Rhizocarpon geographicum | Muellerella - Rh | A895 | LMCC0219 | KT270619 | KT270707 | KT270789 | clade IV |
| A237 (KGA) | Rhizocarpon geographicum | Muellerella - Rh | A929 | LMCC0262 | KT270640 | KT270728 | KT270809 | clade IV |
| A194 (LBM) | Rhizocarpon geographicum | Endococcus macrosporus | A889 | LMCC0251 | KT270615 | KT270703 | KT270785 | clade IV |
| A194 (SAB) | Rhizocarpon geographicum | Endococcus macrosporus | A918 | LMCC0361 | KT270632 | KT270721 | KT270801 | clade IV |
| A254 (SAB) | Lecanora polytropa | Muellerella - Lp | A1045 | LMCC0377 | KT263349 | KT263381 | KT263413 | clade IV |
| A675 (KGA) | Tephromela atra | Taeniolella atricerebrina | A980 | LMCC0317 | KT270672 | KT270754 | KT270841 | clade IV |
| A832 (KGA) | Lecanora bicincta | Arthonia varians | A969 | LMCC0300 | KT270665 | KT270748 | KT270834 | clade IV |
| A94 (LBM) | Lecanora intricata | Muellerella - Li | A587 | LMCC0195 | KT263165 | KT263209 | KT263253 | clade V |
| A122 (MY) | Aspicilia caesiocinerea | Endococcus rugulosus | A521 | LMCC0141 | KT263133 | KT263177 | KT263221 | clade V |
| A122 (LBM) | Aspicilia caesiocinerea | Endococcus rugulosus | A574 | LMCC0185 | KT263160 | KT263204 | KT263248 | clade V |
| A267 (MY) | Aspicilia | Endococcus verrucosus | A952 | LMCC0289 | KT270655 | – | KT270824 | clade V |
| A267 (SAB) | Aspicilia | Endococcus verrucosus | A1000 | LMCC0333 | KT263328 | KT263361 | KT263393 | clade V |
| A307 (LBM) | Lecanora intricata | Muellerella - Li | A879 | LMCC0246 | KT270608 | KT270696 | KT270778 | clade V |
| A307 (LBM) | Lecanora intricata | Muellerella - Li | A884 | LMCC0247 | KT270613 | KT270701 | KT270783 | clade V |
| A309 (LBM) | Rhizocarpon geographicum | Endococcus macrosporus | A912 | LMCC0256 | KT270630 | KT270718 | KT270800 | clade V |
| A309 (TM) | Rhizocarpon geographicum | Endococcus macrosporus | A914 | LMCC0257 | KT270631 | KT270719 | – | clade V |
| A309 (SAB) | Rhizocarpon geographicum | Endococcus macrosporus | A920 | LMCC0260 | KT270634 | KT270723 | KT270803 | clade V |
| A329 (TM) | Aspicilia | Endococcus verrucosus | A926 | LMCC0304 | KT270637 | KT270726 | KT270806 | clade V |
| A329 (TM) | Aspicilia | Endococcus verrucosus | A927 | LMCC0270 | KT270638 | – | KT270807 | clade V |
| A329 (LBM) | Aspicilia | Endococcus verrucosus | A928 | LMCC0271 | KT270639 | KT270727 | KT270808 | clade V |
| A352 (KGA) | Lecanora polytropa | Cercidospora epipolytropa | A945 | LMCC0284 | KT270649 | KT270735 | KT270818 | clade V |
| A352 (TM) | Lecanora polytropa | Cercidospora epipolytropa | A946 | LMCC0307 | KT270650 | KT270736 | KT270819 | clade V |
| A398 (SAB) | Lecidea lapicida | Cecidonia umbonella | A955 | LMCC0291 | KT270657 | KT270741 | KT270826 | clade V |
| A666 (SAB) | Rhizocarpon geographicum | Endococcus macrosporus | A1025 | LMCC0348 | KT263337 | KT263370 | – | clade V |
| A703 (SAB) | Lecanora polytropa | Muellerella - Lp | A983 | LMCC0302 | KT270674 | KT270756 | KT270843 | clade V |
| A703 (LBM) | Lecanora polytropa | Muellerella - Lp | A987 | LMCC0321 | KT270676 | KT270758 | KT270845 | clade V |
| A703 (LBM) | Lecanora polytropa | Muellerella - Lp | A974 | LMCC0314 | KT270668 | KT270751 | KT270837 | clade V |
| A12 (MY) | Lecidea sp. | Muellerella pygmaea | A526 | LMCC0146 | KT263136 | KT263180 | KT263224 | clade VI |
| A12 (SAB) | Lecidea sp. | Muellerella pygmaea | A527 | LMCC0147 | KT263137 | KT263181 | KT263225 | clade VI |
| A12 (TM) | Lecidea sp. | Muellerella pygmaea | A530 | – | KT263139 | KT263183 | KT263227 | clade VI |
| A12 (TM) | Lecidea sp. | Muellerella pygmaea | A535 | LMCC0153 | KT263143 | KT263187 | KT263231 | clade VI |
| A12 (SAB) | Lecidea sp. | Muellerella pygmaea | A536 | LMCC0154 | KT263144 | KT263188 | KT263232 | clade VI |
| A12 (LBM) | Lecidea sp. | Muellerella pygmaea | A544 | LMCC0161 | KT263149 | KT263193 | KT263237 | clade VI |
| A12 (LBM) | Lecidea sp. | Muellerella pygmaea | A546 | – | KT263150 | KT263194 | KT263238 | clade VI |
| A12 (LBM) | Lecidea sp. | Muellerella pygmaea | A892 | LMCC0216 | KT270617 | KT270705 | KT270787 | clade VI |
| A37 (TM) | Tephromela atra | Taeniolella atricerebrina | A898 | – | KT270621 | KT270709 | KT270791 | clade VI |
| A46 (LBM) | Tephromela atra | Taeniolella atricerebrina | A525 | LMCC0393 | KT263135 | KT263179 | KT263223 | clade VI |
| A46 (SAB) | Tephromela atra | Taeniolella atricerebrina | A572 | LMCC0183 | KT263159 | KT263203 | KT263225 | clade VI |
| A94 (SAB) | Lecanora intricata | Muellerella -Li | A575 | LMCC0186 | KT263161 | KT263205 | KT263249 | clade VI |
| A94 (LBM) | Lecanora intricata | Muellerella - Li | A576 | LMCC0187 | KT263162 | KT263206 | KT263250 | clade VI |
| A94 (MY) | Lecanora intricata | Muellerella -Li | A581 | LMCC0192 | KT263163 | KT263207 | KT263251 | clade VI |
| A100 (TM) | Umbilicaria cylindrica | Stigmidium gyrophorarum | A564 | LMCC0175 | KT263155 | KT263199 | KT263243 | clade VI |
| A100 (KGA) | Umbilicaria cylindrica | Stigmidium gyrophorarum | A566 | LMCC0177 | KT263156 | KT263200 | KT263244 | clade VI |
| A106 (SAB) | Tephromela atra | Taeniolella atricerebrina | A562 | LMCC0173 | KT263154 | KT263198 | KT263242 | clade VI |
| A149 (TM) | Protoparmela badia | Phacographa protoparmeliae | A555 | LMCC0166 | KT263153 | KT263197 | KT263241 | clade VI |
| A173 (SAB) | Lecanora polytropa | Lichenoconium lecanorae | A513 | LMCC0134 | KT263127 | KT263172 | KT263216 | clade VII |
| A173 (SAB) | Lecanora polytropa | Lichenoconium lecanorae | A529 | LMCC0149 | KT263138 | KT263182 | KT263226 | clade VII |
| A173 (TM) | Lecanora polytropa | Lichenoconium lecanorae | A538 | LMCC0156 | KT263145 | KT263189 | KT263233 | clade VII |
| A173 (KGA) | Lecanora polytropa | Lichenoconium lecanorae | A943 | LMCC0282 | KT270648 | KT270734 | KT270817 | clade VII |
| A184 (MY) | Tephromela atra | Taeniolella atricerebrina | A543 | LMCC0160 | KT263148 | KT263192 | KT263236 | clade VI |
| A184 (SAB) | Tephromela atra | Taeniolella atricerebrina | A596 | LMCC0203 | KT263167 | KT263211 | KT263255 | clade VI |
| A184 (LBM) | Tephromela atra | Taeniolella atricerebrina | A597 | LMCC0204 | KT263168 | KT263212 | KT263256 | clade VI |
| A184 (KGA) | Tephromela atra | Taeniolella atricerebrina | A599 | LMCC0206 | KT263170 | KT263214 | KT263258 | clade VI |
| A198 (TM) | Rhizocarpon geographicum | Endococcus macrosporus | A933 | LMCC0274 | KT270641 | – | KT270810 | clade VII |
| A215 (KGA) | Lecanora polytropa | Lichenoconium lecanorae | A598 | LMCC0205 | KT263169 | KT263213 | KT263257 | clade VI |
| A215 (TM) | Lecanora polytropa | Lichenoconium lecanorae | A594 | LMCC0201 | KT263166 | KT263210 | KT263254 | clade VI |
| A241 (KGA) | Tephromela atra | Taeniolella atricerebrina | A894 | LMCC0218 | KT270618 | KT270706 | KT270788 | clade VI |
| A254 (LBM) | Lecanora polytropa | Muellerella - Lp | A906 | LMCC0226 | KT270627 | KT270715 | KT270797 | clade VI |
| A254 (KGA) | Lecanora polytropa | Muellerella - Lp | A953 | LMCC0309 | KT270656 | KT270740 | KT270825 | clade VI |
| A254 (SAB) | Lecanora polytropa | Muellerella - Lp | A962 | LMCC0296 | KT270662 | KT270745 | KT270831 | clade VI |
| A263 (LBM) | Rhizocarpon geographicum | Muellerella - Rh | A878 | LMCC0245 | KT270607 | KT270695 | KT270777 | clade VI |
| A280 (KGA) | Tephromela atra | Skyttea tephromelarum | A880 | LMCC0212 | KT270609 | KT270697 | KT270779 | clade VI |
| A280 (MY) | Tephromela atra | Skyttea tephromelarum | A881 | LMCC0213 | KT270610 | KT270698 | KT270780 | clade VI |
| A280 (LBM) | Tephromela atra | Skyttea tephromelarum | A882 | LMCC0214 | KT270611 | KT270699 | KT270781 | clade VI |
| A280 (LBM) | Tephromela atra | Skyttea tephromelarum | A883 | LMCC0215 | KT270612 | KT270697 | KT270782 | clade VI |
| A280 (SAB) | Tephromela atra | Skyttea tephromelarum | A896 | – | KT270620 | KT270708 | KT270790 | clade VI |
| A280 (TM) | Tephromela atra | Skyttea tephromelarum | A900 | LMCC0220 | KT270622 | KT270710 | KT270792 | clade VI |
| A280 (SAB) | Tephromela atra | Skyttea tephromelarum | A942 | LMCC0281 | KT270647 | KT270733 | KT270816 | clade VI |
| A296 (MY) | Rhizocarpon geographicum | Endococcus macrosporus | A934 | LMCC0275 | KT270642 | KT270729 | KT270811 | clade VI |
| A296 (SAB) | Rhizocarpon geographicum | Endococcus macrosporus | A948 | LMCC0308 | KT270652 | KT270737 | KT270821 | clade VI |
| A319 (SAB) | Lecidea sp. | Muellerella pygmaea | A869 | LMCC0263 | KT270598 | KT270686 | KT270768 | clade VI |
| A319 (MY) | Lecidea sp. | Muellerella pygmaea | A874 | LMCC0243 | KT270603 | KT270691 | KT270773 | clade VI |
| A319 (TM) | Lecidea sp. | Muellerella pygmaea | A938 | LMCC0277 | KT270643 | KT270730 | KT270812 | clade VI |
| A319 (TM) | Lecidea sp. | Muellerella pygmaea | A940 | LMCC0279 | KT270645 | KT270731 | KT270814 | clade VI |
| A319 (SAB) | Lecidea sp. | Muellerella pygmaea | A941 | LMCC0280 | KT270646 | KT270732 | KT2708145 | clade VI |
| A319 (LBM) | Lecidea sp. | Muellerella pygmaea | A998 | LMCC0325 | KT270670 | KT270761 | KT270848 | clade VI |
| A329 (MY) | Aspicilia | Endococcus verrucosus | A925 | LMCC0269 | KT270636 | KT270725 | KT270805 | clade VI |
| A329 (LBM) | Aspicilia | Endococcus verrucosus | A947 | LMCC0285 | KT270651 | – | KT270820 | clade VI |
| A329 (KGA) | Aspicilia | Endococcus verrucosus | A1013 | LMCC0338 | KT263333 | KT263366 | KT263398 | clade VI |
| A347 (TM) | Lecidea lapicida | Cecidonia umbonella | A864 | LMCC0237 | KT270593 | KT270681 | KT270763 | clade VI |
| A347 (KGA) | Lecidea lapicida | Cecidonia umbonella | A867 | LMCC0240 | KT270596 | KT270684 | KT270766 | clade VI |
| A347 (KGA) | Lecidea lapicida | Cecidonia umbonella | A868 | LMCC0209 | KT270597 | KT270685 | KT270767 | clade VI |
| A347 (LBM) | Lecidea lapicida | Cecidonia umbonella | A870 | LMCC0210 | KT270599 | KT270687 | KT270769 | clade VI |
| A347 (SAB) | Lecidea lapicida | Cecidonia umbonella | A871 | LMCC0211 | KT270600 | KT270688 | KT270770 | clade VI |
| A347 (LBM) | Lecidea lapicida | Cecidonia umbonella | A872 | LMCC0241 | KT270601 | KT270689 | KT270771 | clade VI |
| A347 (TM) | Lecidea lapicida | Cecidonia umbonella | A876 | – | KT270605 | KT270693 | KT270775 | clade VI |
| A347 (KGA) | Lecidea lapicida | Cecidonia umbonella | A877 | LMCC0244 | KT270606 | KT270694 | KT270776 | clade VI |
| A357 (TM) | Lecidea sp. | Muellerella pygmaea | A904 | LMCC0224 | KT270625 | KT270713 | KT270795 | clade VI |
| A357 (TM) | Lecidea sp. | Muellerella pygmaea | A905 | LMCC0225 | KT270626 | KT270714 | KT270796 | clade VI |
| A357 (SAB) | Lecidea sp. | Muellerella pygmaea | A958 | LMCC0294 | KT270660 | KT270744 | KT270829 | clade VI |
| A357 (LBM) | Lecidea sp. | Muellerella pygmaea | A1002 | LMCC0334 | KT263329 | KT263362 | KT263394 | clade VI |
| A357 (KGA) | Lecidea sp. | Muellerella pygmaea | A1004 | LMCC0335 | KT263330 | KT263363 | KT263395 | clade VI |
| A357 (LBM) | Lecidea sp. | Muellerella pygmaea | A1018 | LMCC0342 | KT263334 | KT263367 | KT263399 | clade VI |
| A357 (TM) | Lecidea sp. | Muellerella pygmaea | A1019 | LMCC0343 | KT263335 | KT263368 | KT263400 | clade VI |
| A373 (KGA) | Lecidea sp. | Muellerella pygmaea | A957 | LMCC0293 | KT270659 | KT270743 | KT270828 | clade VI |
| A373 (TM) | Lecidea sp. | Muellerella pygmaea | A1030 | LMCC0352 | KT263340 | KT263373 | KT263404 | clade VI |
| A408 (LBM) | Rhizocarpon geographicum | Endococcus macrosporus | A901 | LMCC0221 | KT270623 | KT270711 | KT270793 | clade VI |
| A408 (TM) | Rhizocarpon geographicum | Endococcus macrosporus | A919 | LMCC0259 | KT270633 | KT270722 | KT270802 | clade VII |
| A426 (KGA) | Lecanora polytropa | Muellerella - Lp | A1049 | LMCC0381 | KT263352 | KT263384 | KT263416 | clade VII |
| A440 (SAB) | Tephromela atra | Muellerella atricola | A1050 | LMCC0382 | KT263353 | KT263385 | KT263417 | clade VII |
| A440 (LBM) | Tephromela atra | Muellerella atricola | A1051 | LMCC0383 | KT263354 | KT263386 | KT263418 | clade VII |
| A440 (LBM) | Tephromela atra | Muellerella atricola | A1052 | LMCC0384 | KT263355 | KT263387 | KT263419 | clade VII |
| A440 (LBM) | Tephromela atra | Muellerella atricola | A1054 | LMCC0386 | KT263357 | KT263389 | – | clade VII |
| A464 (LBM) | Tephromela atra | Skyttea tephromelarum | A1058 | LMCC0390 | KT263358 | KT263390 | KT263421 | clade VI |
| A464 (MY) | Tephromela atra | Skyttea tephromelarum | A1059 | LMCC0391 | KT263359 | KT263391 | KT263422 | clade VI |
| A469 (SAB) | Rhizocarpon geographicum | Opegrapha geographicola | A1060 | – | KT263360 | KT263392 | KT263423 | clade VI |
| A475 (LBM) | Tephromela atra | Taeniolella atricerebrina | A1008 | LMCC0337 | KT263331 | KT263364 | KT263396 | clade VI |
| A613 (KGA) | Schaereria fuscocinerea | Muellerella - Sf | A986 | LMCC0320 | KT270675 | KT270757 | KT270844 | clade VI |
| A643 (KGA) | Lecidea sp. | Muellerella pygmaea | A1029 | LMCC0351 | KT263339 | KT263372 | KT263403 | clade VI |
| A651 (TM) | Lecanora polytropa | Carbonea supersparsa | A1020 | LMCC0344 | KT263336 | KT263369 | KT263401 | clade VI |
| A651 (KGA) | Lecanora polytropa | Carbonea supersparsa | A1046 | LMCC0378 | KT263350 | KT263382 | KT263414 | clade VI |
| A653 (MY) | Tephromela atra | Taeniolella atricerebrina | A975 | LMCC0315 | KT270669 | KT270752 | KT270838 | clade VI |
| A663 (LBM) | Tephromela atra | Muellerella atricola | A981 | LMCC0318 | KT270673 | KT270755 | KT270842 | clade VI |
| A663 (TM) | Tephromela atra | Muellerella atricola | A1042 | LMCC0375 | KT263348 | – | KT263412 | clade VI |
| A670 (KGA) | Lecanora polytropa | Muellerella - Lp | A999 | LMCC0326 | KT270680 | KT270762 | KT270849 | clade VI |
| A670 (TM) | Lecanora polytropa | Muellerella - Lp | A1035 | – | KT263344 | KT263377 | KT263408 | clade VI |
| A683 (SAB) | Lecanora polytropa | Muellerella - Lp | A978 | LMCC0301 | KT270670 | KT270753 | KT270839 | clade VI |
| A683 (LBM) | Lecanora polytropa | Muellerella - Lp | A988 | LMCC0303 | KT270677 | KT270759 | KT270846 | clade VI |
| A683 (TM) | Lecanora polytropa | Muellerella - Lp | A1036 | LMCC0357 | KT263345 | KT263378 | KT263409 | clade VI |
| A683 (TM) | Lecanora polytropa | Muellerella - Lp | A1047 | LMCC0379 | KT263351 | KT263383 | KT263415 | clade VI |
| A689 (SAB) | Tephromela atra | Taeniolella atricerebrina | A979 | LMCC0316 | KT270671 | – | KT270840 | clade VI |
| A698 (KGA) | Rhizocarpon geographicum | Endococcus macrosporus | A971 | LMCC0313 | KT270666 | KT270749 | KT270835 | clade VI |
| A698 (MY) | Rhizocarpon geographicum | Endococcus macrosporus | A1027 | LMCC0349 | KT263338 | KT263371 | KT263402 | clade VI |
| A703 (TM) | Lecanora polytropa | Muellerella - Lp | A1031 | LMCC0353 | KT263341 | KT263374 | KT263405 | clade VI |
| A703 (TM) | Lecanora polytropa | Muellerella - Lp | A1032 | LMCC0354 | KT263342 | KT263375 | KT263406 | clade VI |
| A703 (MY) | Lecanora polytropa | Muellerella - Lp | A1034 | LMCC0356 | KT263343 | KT263376 | KT263407 | clade VI |
| A703 (MY) | Lecanora polytropa | Muellerella - Lp | A1040 | LMCC0373 | KT263346 | KT263379 | KT263410 | clade VI |
| A709 (MY) | Rhizocarpon geographicum | Muellerella - Rh | A1041 | LMCC0374 | KT263347 | KT263380 | KT263411 | clade VI |
| A832 (MY) | Lecanora bicincta | Arthonia varians | A967 | LMCC0312 | KT270663 | KT270746 | KT270832 | clade VI |
| A840 (TM) | Lecidea sp. | Muellerella pygmaea | A968 | LMCC0299 | KT270664 | KT270747 | KT270833 | clade VI |
| A840 (TM) | Lecidea sp. | Muellerella pygmaea | A973 | LMCC0396 | KT270667 | KT270750 | KT270836 | clade VI |
| A341 (TM) | Pertusaria corallina | Sclaerococcum sphaerale | A1016 | LMCC0341 | KT263077 | KT263097 | KT263115 | Sclerococcum |
| A100 (SAB) | Umbilicaria cylindrica | Stigmidium gyrophorarum | A561 | LMCC0172 | KT263079 | KT263092 | KT263108 | basal to Chaetothyriaceae |
| A100 (LBM) | Umbilicaria cylindrica | Stigmidium gyrophorarum | A563 | LMCC0174 | KT263080 | KT263093 | KT263109 | basal to Chaetothyriaceae |
| A94 (KGA) | Lecanora intricata | Muellerella - In | A512 | LMCC0133 | KT263078 | KT263091 | KT263107 | Herpothrychielaceae |
| A670 (LBM) | Lecanora polytropa | Muellerella - Lp | A1044 | LMCC0376 | KT263082 | KT263099 | KT263117 | Herpothrychielaceae |
| A678 (SAB) | Lecanora bicincta | Sphaerellothecium atrinae | A1033 | LMCC0355 | KT263081 | KT263098 | KT263116 | Herpothrychielaceae |
| A97 (KGA) | Rhizocarpon geographicum | Muellerella - Rh | A579 | – | KT263089 | KT263105 | KT263124 | Epibryaceae |
| A651 (LBM) | Lecanora polytropa | Carbonea supersparsa | A1026 | LMCC0370 | KT263090 | KT263106 | KT263125 | Epibryaceae |
| A56 (TM) | Lecanora intricata | Muellerella - Li | A568 | LMCC0179 | KT263157 | KT263201 | KT263245 | incerta saedis |