Table 2. Summary of the resequencing coverage.
Sample | Total reads | Total_map (%) | Identity (%) | Depth | Coverage_ratio (%) |
---|---|---|---|---|---|
Shouxing | 29,882,152 | 82.98% | 98.91% | 13.07 | 93.55% |
Xinguowei | 30,603,252 | 84.13% | 98.92% | 13.2 | 94.74% |
The analyses were conducted using the Map_stat_v0.1.pl software [34]. Total map (%): number of clean reads successfully mapping to the genome/total number of clean reads. Identity (%): (total number of all clean reads mapping to the genome—number of all mismatched bases)/total number of all clean reads mapping to the genome. Coverage_ratio (%): total number of bases mapping to the genome/genome size.