Table 1. Sequencing primers for the Lactobacillus species used in this study.
Species | Primer | Sequence (5ʹ-3ʹ) | Annealing temperature (°C) | Amplicon size (bp) |
---|---|---|---|---|
L. crispatus | LcrisF | AGCGAGCGGAACTAACAGATTTAC | 58 | 154 |
LcrisR | AGCTGATCATGCGATCTGCTT | |||
L. gallinarum | LgallF | CGGTAATGACGCTGGGGAC | 56 | 128 |
LcrisR | AGCTGATCATGCGATCTGCTT | |||
L. fermentum | LfermF | GCACCTGATTGATTTTGGTCG | 58 | 317 |
LactoR | GTCCATTGTGGAAGATTCCC | |||
L. johnsonii | LactoF | TGGAAACAGRTGCTAATACCG | 56 | 322 |
LjohnR | CAGTTACTACCTCTATCTTTCTTCACTAC | |||
L. salivarius | LsaliF | CGAAACTTTCTTACACCGAATGC | 58 | 332 |
LactoR | GTCCATTGTGGAAGATTCCC | |||
L. acidophilus | F_acid | GAAAGAGCCCAAACCAAGTGATT | 56 | 85 |
R_acid | CTTCCCAGATAATTCAACTATCGCTTA | |||
L. casei | F_case | CTATAAGTAAGCTTTGATCCGGAGATTT | 56 | 132 |
R_case | CTTCCTGCGGGTACTGAGATGT | |||
L. delbrueckii | F_delb | CACTTGTACGTTGAAAACTGAATATCTTAA | 56 | 94 |
R_delb | CGAACTCTCTCGGTCGCTTT | |||
L. paracasei | F_paca | ACATCAGTGTATTGCTTGTCAGTGAATAC | 56 | 88 |
R_paca | CCTGCGGGTACTGAGATGTTTC | |||
L. plantarum | F_plan | TGGATCACCTCCTTTCTAAGGAAT | 56 | 80 |
R_plan | TGTTCTCGGTTTCATTATGAAAAAATA | |||
L. reuteri | F_reut | ACCGAGAACACCGCGTTATTT | 56 | 93 |
R_reut | CATAACTTAACCTAAACAATCAAAGATTGTCT | |||
E. faecalis | Efs130F | AACCTACCCATCAGAGGG | 56 | 360 |
Efs490R | GACGTTCAGTTACTAACG | |||
Lactobacillus spp | F_alllact | TGGATGCCTTGGCACTAGGA | 58 | 92 |
R_alllact | AAATCTCCGGATCAAAGCTTACTTAT | |||
All bacteria | F_eub | TCCTACGGGAGGCAGCAGT | 58 | 466 |
R_eub | GGACTACCAGGGTATCTAATCCTGTT |