Table 1. Sequencing primers for the Lactobacillus species used in this study.
| Species | Primer | Sequence (5ʹ-3ʹ) | Annealing temperature (°C) | Amplicon size (bp) |
|---|---|---|---|---|
| L. crispatus | LcrisF | AGCGAGCGGAACTAACAGATTTAC | 58 | 154 |
| LcrisR | AGCTGATCATGCGATCTGCTT | |||
| L. gallinarum | LgallF | CGGTAATGACGCTGGGGAC | 56 | 128 |
| LcrisR | AGCTGATCATGCGATCTGCTT | |||
| L. fermentum | LfermF | GCACCTGATTGATTTTGGTCG | 58 | 317 |
| LactoR | GTCCATTGTGGAAGATTCCC | |||
| L. johnsonii | LactoF | TGGAAACAGRTGCTAATACCG | 56 | 322 |
| LjohnR | CAGTTACTACCTCTATCTTTCTTCACTAC | |||
| L. salivarius | LsaliF | CGAAACTTTCTTACACCGAATGC | 58 | 332 |
| LactoR | GTCCATTGTGGAAGATTCCC | |||
| L. acidophilus | F_acid | GAAAGAGCCCAAACCAAGTGATT | 56 | 85 |
| R_acid | CTTCCCAGATAATTCAACTATCGCTTA | |||
| L. casei | F_case | CTATAAGTAAGCTTTGATCCGGAGATTT | 56 | 132 |
| R_case | CTTCCTGCGGGTACTGAGATGT | |||
| L. delbrueckii | F_delb | CACTTGTACGTTGAAAACTGAATATCTTAA | 56 | 94 |
| R_delb | CGAACTCTCTCGGTCGCTTT | |||
| L. paracasei | F_paca | ACATCAGTGTATTGCTTGTCAGTGAATAC | 56 | 88 |
| R_paca | CCTGCGGGTACTGAGATGTTTC | |||
| L. plantarum | F_plan | TGGATCACCTCCTTTCTAAGGAAT | 56 | 80 |
| R_plan | TGTTCTCGGTTTCATTATGAAAAAATA | |||
| L. reuteri | F_reut | ACCGAGAACACCGCGTTATTT | 56 | 93 |
| R_reut | CATAACTTAACCTAAACAATCAAAGATTGTCT | |||
| E. faecalis | Efs130F | AACCTACCCATCAGAGGG | 56 | 360 |
| Efs490R | GACGTTCAGTTACTAACG | |||
| Lactobacillus spp | F_alllact | TGGATGCCTTGGCACTAGGA | 58 | 92 |
| R_alllact | AAATCTCCGGATCAAAGCTTACTTAT | |||
| All bacteria | F_eub | TCCTACGGGAGGCAGCAGT | 58 | 466 |
| R_eub | GGACTACCAGGGTATCTAATCCTGTT |