Table 4. Genes that were critical nodes in the sub-network.
Critical genes | Number of sub-networks where critical |
---|---|
TP53* | 20 |
AKT1* | 20 |
PCNA* | 17 |
SRC* | 15 |
INS-IGF2 | 12 |
SF3A2 | 10 |
BIRC5 | 10 |
DKC1 | 9 |
ESR1* | 8 |
BUB1 | 7 |
BRCA1 | 7 |
RPL11 | 7 |
YBX1* | 7 |
RPS16* | 6 |
GRB2* | 6 |
POLR2H | 6 |
HNRNPK | 5 |
MDM2 | 5 |
CASP3 | 5 |
POLR2A* | 5 |
CDK5 | 5 |
SP1 | 5 |
A node is included if the gene appears in at least 20% of experimental sub-networks (5 out of 21). These nodes have a critical role in several sub-networks and may be key cryptic genetic factors in metformin’s signaling network. *indicates genes which have known carcinogenic mutations that could significantly alter the networks.