Table II. Barley transcripts homologous to plastid-encoded genes in Arabidopsis that exhibit significant differences in abundance in wild-type and W1-7 seedlings (except for those marked with an asterisk, which are nuclear encoded).
| Accession No.a | Transcript Abundance W1-7/the Wild Typeb | Top Arabidopsis Matchc | Arabidopsis Gene Descriptiond |
|---|---|---|---|
| MLOC 24854.1 | 8.59 | AtCg01050 | NDHD, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 24746.1 | 4.76 | AtCg00190 | RPOB, RNA polymerase subunit-β* |
| MLOC 1704.1 | 4.74 | AtCg00190 | RPOB, RNA polymerase subunit-β* |
| MLOC 54708.1 | 4.56 | AtCg00170 | RPOC2, RNA polymerase family protein* |
| MLOC 24776.1 | 3.96 | AtCg01040 | YCF5, Cyt C assembly protein* |
| MLOC 9149.1 | 3.24 | AtCg01010 | NDHF, NADH-ubiquinone oxidoreductase (complex I), chain 5 protein |
| MLOC 9313.1 | 3.09 | AtCg00040 | MATK, maturase K |
| MLOC 25280.1 | 3.047 | AtCg01010 | NDHF, NADH-ubiquinone oxidoreductase (complex I), chain 5 protein |
| MLOC 61567.1 | 2.92 | AtCg01010 | NDHF, NADH-ubiquinone oxidoreductase (complex I), chain 5 protein |
| MLOC 456.1 | 2.87 | AtCg00170 | RPOC2, RNA polymerase family protein* |
| MLOC 32552.1 | 2.87 | AtCg01300 | RPL23.2, ribosomal protein L23 |
| MLOC 34251.1 | 2.81 | AtCg01050 | NDHD, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 24733.1 | 2.81 | AtCg00180 | RPOC1, RNA polymerase family protein* |
| MLOC 24753.1 | 2.78 | AtCg01050 | NDHD, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC24802.1 | 2.63 | AtCg00040 | MATK, maturase K |
| MLOC 36249.1 | 2.62 | AtCg01050 | NDHD, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 26369.1 | 2.61 | AtCg01250 | NDHB.2, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 63387.1 | 2.58 | AtCg01110 | NDHH, NAD(P)H dehydrogenase subunit H |
| MLOC 9538.1 | 2.53 | AtCg00180 | RPOC1, RNA polymerase family protein* |
| MLOC 34273.1 | 2.47 | AtCg00040 | MATK, maturase K |
| MLOC 8394.1 | 2.47 | AtCg00360 | YCF3, tetratricopeptide repeat-like superfamily protein |
| MLOC 33340.1 | 2.40 | AtCg01250 | NDHB.2, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 365.2 | 2.34 | AtCg01250 | NDHB.2, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 77504.1 | 2.23 | AtCg01250 | NDHB.2, NADH-ubiquinone/plastoquinone (complex I) protein |
| MLOC 6335.1 | 2.16 | AtCg00590 | ORF31, electron carriers |
| MLOC 36200.1 | 2.11 | AtCg00730 | PETD, photosynthetic electron transfer D |
| MLOC 36158.1 | 2.11 | AtCg00590 | ORF31, electron carriers |
| MLOC 9573.1 | 2.10 | AtCg00170 | RPOC2, RNA polymerase family protein* |
| MLOC 2607.1 | 2.06 | AtCg00570 | PSBF, PSII reaction center protein F |
| MLOC 24780.1 | 2.03 | AtCg00730 | PETD, photosynthetic electron transfer D |
| MLOC 24745.1 | 2.02 | AtCg00660 | RPL20, ribosomal protein L20 |
| MLOC 9018.1 | 2.00 | AtCg00640 | RPL33, ribosomal protein L33 |
| MLOC 8945.1 | 1.95 | AtCg00420 | NDHJ, NADH dehydrogenase subunit J |
| MLOC 7873.1 | 1.95 | AtCg01090 | NDHI, subunit of the chloroplast NAD(P)H dehydrogenase complex |
| MLOC 9520.1 | 1.93 | AtCg00470 | ATPE, ATP synthase ε-chain |
| MLOC 3829.1 | 1.93 | AtCg00530 | YCF10 |
| MLOC 8957.1 | 1.91 | AtCg00420 | NDHJ, NADH dehydrogenase subunit J |
| MLOC 9641.1 | 1.90 | AtCg00530 | YCF10 |
| MLOC 36232.1 | 1.88 | AtCg00160 | RPS2, ribosomal protein S2 |
| MLOC 9681.1 | 1.87 | AtCg00530 | YCF10 |
| MLOC 61555.1 | 1.86 | AtCg01080 | NDHG, NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 |
| MLOC 8426.1 | 1.85 | AtCg00530 | YCF10 |
| MLOC 12189.1 | 1.82 | AtCg00420 | NDHJ, NADH dehydrogenase subunit J |
| MLOC 65510.1 | 1.82 | AtCg01090 | NDHI, subunit of the chloroplast NAD(P)H dehydrogenase complex |
| MLOC 24811.1 | 1.78 | AtCg00420 | NDHJ, NADH dehydrogenase subunit J |
| MLOC 41067.1 | 1.77 | AtCg00630 | PSAJ, PSI subunit J |
| MLOC 68023.1 | 1.76 | AtCg00530 | YCF10 |
| MLOC 34111.1 | 1.75 | AtCg00540 | PETA, photosynthetic electron transfer A |
| MLOC 9478.1 | 1.69 | AtCg00160 | RPS2, ribosomal protein S2 |
| MLOC 61315 | 1.68 | AtCg00480 | ATPB, ATP synthase subunit-β |
| MLOC 9572.1 | 1.64 | AtCg01100 | NDHA, NADH dehydrogenase family protein |
| MLOC 59993.1 | 1.59 | AtCg00440 | NDHC, NADH dehydrogenase D3 subunit |
| MLOC 63096.1 | 1.31 | AtCg00680 | PSBB, PSII reaction center protein B |
| MLOC 9455.1 | 1.30 | AtCg00680 | PSBB, PSII reaction center protein B |
| MLOC 9691.1 | 1.22 | AtCg00550 | PSBJ, PSII reaction center protein J |
| MLOC 24726.1 | 0.61 | AtCg01060 | PSAC, PsaC subunit of PSI |
| MLOC 9445.1 | 0.45 | AtCg01110 | NDHH, NAD(P)H dehydrogenase subunit H |
a
Barley gene model primary accession number (Mayer et al., 2012).
b
Transcript abundance in W1-7 seedlings relative to transcript abundance in wild-type seedlings.
c
The Arabidopsis Information Resource accession of top Arabidopsis match based on BLAST e value.
d
The Arabidopsis Information Resource annotation of Arabidopsis gene.