Table 2.
List of genes specific to Lysobacter capsici AZ78 or shared with Stenotrophomonas malthophilia K279a and Xanthomonas campestris pv. campestris ATCC 33913.
| Shared features | Specific features | |||
|---|---|---|---|---|
| Name | Biological activity | Name | Biological activity | |
| Interaction with microorganisms | expR (AZ78_4489, 4492, 4498, 4503, 4505) | Production of extracellular protease | Proteolytic Region (AZ78_4508, 4509, 4511, 4512) | Production of zinc extracellular proteases |
| gluA (AZ78_3675) | Degradation of glucans | Proteolytic Region (AZ78_4514, 4516) | Production of bacterial leucyl aminopeptidase | |
| chiA (AZ78_1828) | Degradation of chitin | Metalloendopeptidase Region (AZ78_269, 271, 272) | Production of metalloendopeptidases | |
| feoABC (AZ78_5035-5037) | Uptake of ferrous iron | cel5G (AZ78_3681) | Degradation of cellulose | |
| gluB (AZ78_4722); gluC (AZ78_1531); KF738079 (AZ78_4157); cel8A (AZ78_4006); celA1 (AZ78_4352) | Degradation of glucans | |||
| chiB (AZ78_54) | Degradation of chitin | |||
| NPR-PKS (AZ78_1098) | Production of antifungal compounds | |||
| lanL (AZ78_848) | Production of lantibiotics | |||
| csbC-entEBF-viuB-entA (AZ78_407-412) | Synthesis of cathecol siderophores | |||
| Interaction with environment | pigABCDEFG (AZ78_3467-3472) | Biosynthesis of xanthomonadin | Catalase/Peroxidase (AZ78_681, 1116, 1469) | Resistance to reactive oxygen species |
| copA, copB (AZ78_402-403) | Resistance to copper ions | cphA-cphB (AZ78_4099-4100) | Cyanophycin metabolism | |
| czcCBA (AZ78_3809-3811) | Resistance to heavy metals | Copper efflux region (AZ78_560-562) | Resistance to copper ions | |
| Resistance-Nodulation-Division (AZ78_451, 452, 826) | Resistance to toxic compounds | SMR protein (AZ78_906, 1192, 2446) | Resistance to toxic compounds | |
| ABC transporters (AZ78_929, 967, 3014) | Resistance to β-lactams | MFS protein (AZ78_266, 1103, 3068, 3698, 3949, 4767) | Resistance to toxic compounds | |
| blaL2 (AZ78_ 3946) | Resistance to β-lactams | Kanamycin nucleotidyltransferase (AZ78_3393) | Resistance to aminoglycosides | |
| B-lactamases (AZ78_238, 2665, 3448, 3627, 4028) | Resistance to β-lactams | |||