Skip to main content
. 2016 Feb 5;6:20575. doi: 10.1038/srep20575

Table 1. Data collection and refinement statistics for glucosidase II α catalytic subunit.

  Tris-bound SeMet Apo DNJ-bound
Crystallographic data
 Space group R32 R32 R32
 Unit cell a/b/c (Å) 189.0/189.0/157.2 189.3/189.3/158.0 189.5/189.5/157.8
Data processing statistics
 Beam line PF BL5A PF-AR NE3A PF-AR NE3A
 Wavelength (Å) 1.00000 0.97946 0.97946
 Resolution (Å) 50–1.40 (1.42–1.40) 50–2.40 (2.44–2.40) 50–1.60 (1.63–1.60)
 Total/unique reflections 1,537,957/209,648 470,213/42,596 766,615/141,836
 Completeness (%) 99.9 (100.0) 100.0 (100.0) 98.3 (98.0)
Rmerge (%) 6.0 (41.0) 12.3 (45.5) 8.6 (41.9)
I/σ (I) 46.3 (5.9) 26.7 (6.4) 23.6 (2.8)
Refinement statistics
 Resolution (Å) 20.0–1.40   20.0–1.60
Rwork/Rfree (%) 15.4/17.5   15.5/18.3
R.m.s. deviations from ideal
 Bond lengths (Å) 0.010   0.011
 Bond angles (°) 1.40   1.43
Ramachandran plot (%)
 Most Favored 87.8   87.8
 Additionally allowed 11.9   11.9
 Generously allowed 0.3   0.3
 Disallowed 0   0
           
  α3-Glc2-bound Man2Glc1-bound
Crystallographic data
 Space group R32 R32
 Unit cell a/b/c (Å) 190.0/190.0/158.6 189.7/189.7/158.3
Data processing statistics
 Beam line SPring-8 BL44XU SPring-8 BL44XU
 Wavelength (Å) 0.90000 0.90000
 Resolution (Å) 50–2.40 (2.44–2.40) 50–2.30 (2.34–2.30)
 Total/unique reflections 323,577/43,022 365,028/48,696
 Completeness (%) 100.0 (100.0) 100.0 (100.0)
Rmerge (%) 9.3 (43.3) 10.8 (45.7)
I/σ (I) 33.5 (6.4) 31.6 (7.2)
Refinement statistics
 Resolution (Å) 20.0–2.40 20.0–2.30
Rwork/Rfree (%) 14.8/19.9 14.4/18.9
R.m.s. deviations from ideal
 Bond lengths (Å) 0.010 0.012
 Bond angles (°) 1.34 1.45
Ramachandran plot (%)
 Most Favored 85.4 86.4
 Additionally allowed 14.2 13.2
 Generously allowed 0.4 0.4
 Disallowed 0 0