Table 1. Summary of polymorphisms detected by the HDRA in the different rice subpopulations.

	O. sativa	IND	AUS	TRJ	TEJ	ARO
Total accessions	1,571	498	187	360	240	38
Phenotyped accessions*	1,146	335	160	256	190	31
Polymorphic SNPs	671,906	619,988	547,928	551,746	470,318	392,943
Non-synonymous polymorphic SNPs	109,814	100,762	88,093	89,863	78,259	62,560
SNPs MAF>0.05	439,280	336,740	328,393	208,055	170,904	290,068
SNPs MAF>0.10	300,769	223,094	238,308	120,538	94,826	195,271
Private SNPs†	—	25,718	10,961	9,322	4,916	3,383

MAF, major allele frequency; SNP, single-nucleotide polymorphism.

^*Accessions phenotyped for grain length.

^†Private SNPs are the SNPs segregating only in the indicated subpopulation.