Table 1. Genome-wide association results for panicle traits divided by subpopulation and covariate combinations.
| Subpopulation | Mixed model | Mixed model+HD Cov. |
|---|---|---|
| All | 709 (358) | 496 (256) |
| aus | 148 (52) | 117 (44) |
| indica | 48 (38) | 54 (39) |
| tropical japonica | 132 (41) | 49 (24) |
| Total associations | 1,037 (489) | 716 (363) |
HD, heading date; LD, linkage disequilbrium; SNP, single-nucleotide polymorphism.
The number of significant peaks is in parentheses and is defined by binning significant SNPs using a sliding window of LD.