Table 1.
Statistics of categorization and abundance of DGE tags
| Summary | T0 | T1 | T2.5 | |
|---|---|---|---|---|
| Raw Data | Total | 4816584 | 4906668 | 4805265 |
| Distinct Tag | 372060 | 322043 | 338137 | |
| Clean Tag | Total number | 4453843 | 4620879 | 4504396 |
| Distinct Tag number | 166167 | 143103 | 153507 | |
| All Tag Mapping to Gene | Total number | 1211139 | 889173 | 1180631 |
| Total % of clean tag | 27.19 % | 19.24 % | 26.21 % | |
| Distinct Tag number | 64057 | 45678 | 59848 | |
| Distinct Tag % of clean tag | 38.55 % | 31.92 % | 38.99 % | |
| Unambiguous Tag Mapping to Gene | Total number | 1207720 | 885861 | 1176439 |
| Total % of clean tag | 27.12 % | 19.17 % | 26.12 % | |
| Distinct Tag number | 63895 | 45557 | 59683 | |
| Distinct Tag % of clean tag | 38.45 % | 31.84 % | 38.88 % | |
| All Tag-mapped Genes | number | 20423 | 17990 | 19966 |
| % of ref genes | 45.35 % | 39.95 % | 44.34 % | |
| Unambiguous Tag-mapped Genes | number | 20376 | 17947 | 19907 |
| % of ref genes | 45.25 % | 39.85 % | 44.21 % | |
| Mapping to Genome | Total number | 2909567 | 3341569 | 3038306 |
| Total % of clean tag | 65.33 % | 72.31 % | 67.45 % | |
| Distinct Tag number | 83956 | 78922 | 78929 | |
| Distinct Tag % of clean tag | 50.53 % | 55.15 % | 51.42 % | |
| Unknown Tag | Total number | 333137 | 390137 | 285459 |
| Total % of clean tag | 7.48 % | 8.44 % | 6.34 % | |
| Distinct Tag number | 18154 | 18503 | 14730 | |
| Distinct Tag % of clean tag | 10.93 % | 12.93 % | 9.60 % |