Table 3. Possible tertiary interactions in vRNA8 structure.
Regions of interacting RNA fragments (5’→3’/3’→5’) | Sequence of fragment 1 (5’→3’) | Sequence of fragment 2 (5’→3’) | Canonical base pairs (including G-U) count of interaction for segment 8 vRNA type A (%) |
---|---|---|---|
(a) 227-231/409-405 | GGAAG | CUUCU | 88.7 |
(b’) 400-404/431-428,426 | UGCUC | G-AGUA | 84.7 |
(b) 426-430/852-848 | GUAGU | AUUAU | 95.7 |