Table 1.
P-values of Wilcoxon signed-rank tests comparing the performance of tREX with each of the comparison methods for the model with parameters (β 0,β 1,γ 1,γ 2)=(3,−0.434,0.3,0.3)
| Resolution/Percent zeros | ||||||
|---|---|---|---|---|---|---|
| Criterion | Method | 0 % | 10 % | 20 % | 30 % | 60 % |
| (A). NRE Model | ||||||
| RMSD | tPAM | 8.0×10−3 | 1.2×10−2 | 9.6×10−2 | 1.1×10−7 | 1.3×10−7 |
| BACH | 5.6×10−10 | 4.1×10−10 | 3.8×10−10 | 3.8×10−10 | 3.8×10−10 | |
| PASTIS | 3.8×10−10 | 2.7×10−7 | 5.5×10−3 | 8.9×10−1 | 9.9×10−1 | |
| ShRec3D | 3.5×10−15 | 3.8×10−10 | 3.8×10−10 | 3.8×10−10 | 3.8×10−10 | |
| ChromSDE | 4.9×10−10 | 5.6×10−10 | 2.7×10−9 | 2.7×10−9 | 5.1×10−9 | |
| Correlation | tPAM | 7.6×10−1 | 9.9×10−1 | 9.9×10−1 | 5.5×10−2 | 1.0×10−1 |
| BACH | 1.5×10−6 | 1.3×10−9 | 8.0×10−10 | 3.8×10−10 | 3.8×10−10 | |
| PASTIS | 9.0×10−10 | 4.5×10−1 | 9.9×10−1 | 9.9×10−1 | 9.9×10−1 | |
| ShRec3D | 3.5×10−15 | 3.8×10−10 | 1.0×10−9 | 7.1×10−10 | 1.7×10−9 | |
| ChromSDE | 3.6×10−7 | 1.3×10−3 | 6.2×10−1 | 1.9×10−1 | 5.7×10−2 | |
| (B). ST Model | ||||||
| RMSD | tPAM | 4.9×10−9 | 1.9×10−9 | 1.2×10−9 | 2.2×10−8 | 3.6×10−9 |
| BACH | 8.5×10−10 | 1.5×10−8 | 2.9×10−9 | 2.1×10−9 | 7.2×10−9 | |
| PASTIS | 6.3×10−10 | 1.0×10−5 | 3.1×10−7 | 2.3×10−4 | 6.3×10−4 | |
| ShRec3D | 4.3×10−7 | 1.5×10−6 | 9.3×10−7 | 8.4×10−7 | 9.6×10−9 | |
| ChromSDE | 1.2×10−8 | 2.0×10−8 | 1.2×10−8 | 1.2×10−8 | 4.6×10−8 | |
| Correlation | tPAM | 3.8×10−10 | 3.8×10−10 | 4.1×10−10 | 3.8×10−10 | 1.2×10−9 |
| BACH | 3.8×10−10 | 3.8×10−10 | 3.8×10−10 | 3.8×10−10 | 4.1×10−10 | |
| PASTIS | 3.8×10−10 | 1.5×10−8 | 4.9×10−6 | 1.5×10−4 | 1.5×10−5 | |
| ShRec3D | 1.0×10−9 | 3.1×10−10 | 5.3×10−9 | 3.6×10−8 | 8.6×10−10 | |
| ChromSDE | 4.1×10−10 | 3.8×10−10 | 4.1×10−10 | 4.3×10−10 | 3.2×10−9 | |
The results for the NRE model are given in the top segment (A) and those for the ST model are given in the bottom segment (B)