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. 2016 Feb 6;17:70. doi: 10.1186/s12859-016-0894-z

Table 3.

Typical running time (in minutes) for completing the 3D reconstruction for a simulated dataset

Resolution/Percent zeros
Methods 0 % 10 % 20 % 30 % 60 %
tREX 7.6 7.3 6.5 5.3 3.3
tPAM 6.8 6.7 5.3 4.7 2.9
BACH 7.9 7.9 7.9 7.9 7.9
PASTIS 1.0 1.0 1.0 1.0 1.0
ShRec3D 1.0 1.0 1.0 1.0 1.0
ChromSDE 2.4 2.6 2.3 1.9 2.1

*For PASTIS and ShRec3D, the typical computational time is less than 1 min. However, PASTIS took several min to run for a few of the replications