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. Author manuscript; available in PMC: 2016 Feb 8.
Published in final edited form as: J Chem Theory Comput. 2015 Feb 10;11(2):373–377. doi: 10.1021/ct500776j

Figure 4.

Figure 4

Boltzmann weighted average free energy surface for solvated uracil along the Zx and Zy sugar pucker coordinates (see 1). Two minima are observed roughly corresponding to C3′-endo and C2′-endo pucker states (black diamonds, also marking saddle points). An apparently periodic transition between these states along the pseudorotation angle (Pθ=arctanZyZx is also observed (white dots). Energies are in kcal/mol and axes are in degrees.