Table 3.
Relative differences in PUFA concentrations (mg/ml) by FADS genotypes compared to the reference genotype in NC1 and NC2a,b,c.
| SNP | Cohort | Genotype | LA | AA | LA:AA | ALA | DHA | EPA | ALA:DHA | ALA:EPA |
|---|---|---|---|---|---|---|---|---|---|---|
| FADS1-FADS2 rs3834458 | NC1 | TTd | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
| Tdel | 1.054 | 0.922 | 1.142 | 1.243 | 1.019 | 1.004 | 1.259 | 1.122 | ||
| Deldel | 1.041 | 0.835 | 1.253 | 1.213 | 0.934 | 0.982 | 1.282 | 1.359 | ||
| P-value | 0.154 | 0.004 | <0.001 | 0.133 | 0.915 | 0.970 | 0.165 | 0.256 | ||
| NC2 | TTd | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| Tdel | 1.044 | 0.933 | 1.106 | 1.011 | 1.019 | 1.014 | 0.987 | 1.000 | ||
| Deldel | 1.120 | 0.799 | 1.426 | 1.064 | 0.940 | 1.023 | 1.244 | 1.036 | ||
| P-value | 0.002 | <0.001 | <0.001 | 0.017 | 0.517 | 0.206 | 0.028 | 0.358 | ||
| FADS2 rs174575 | NC1 | CCd | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 |
| CG | 1.019 | 0.982 | 1.055 | 1.153 | 1.081 | 1.046 | 1.106 | 0.914 | ||
| GG | 1.075 | 0.858 | 1.260 | 0.931 | 0.949 | 0.979 | 0.941 | 0.961 | ||
| P-value | 0.399 | 0.118 | 0.002 | 0.393 | 0.664 | 0.538 | 0.694 | 0.743 | ||
| NC2 | CCd | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | |
| CG | 1.024 | 0.988 | 1.036 | 1.002 | 1.000 | 1.001 | 1.002 | 1.001 | ||
| GG | 0.991 | 0.872 | 1.122 | 0.991 | 0.924 | 0.985 | 1.088 | 1.005 | ||
| P-value | 0.288 | 0.025 | 0.342 | 0.842 | 0.371 | 0.680 | 0.483 | 0.966 |
NC1, Nutrition Cohort 1; NC2, Nutrition Cohort 2; LA, linoleic acid; AA, arachidonic acid; ALA, α-linolenic acid; del=one base-pair deletion.
We present relative difference in PUFA concentrations by genotype compared to the mean concentration in homozygote carriers of the reference genotype. Therefore values greater than one show an average increase compared to the reference SNP and values less than one show an average decrease compared to the reference SNP. Bolded P-values, derived from unadjusted ANOVA, identify groups that differ significantly by genotype.
rs3834458 is FADS1-FADS2 intergenic (NCBI).
Reference genotype.