Table 3. Genes Induced in Systemic Tissue of sid2 but Not in Col-0.
Pos. | AGI Code | Name | Gene Name/Description | Mean Expression Value |
Fold Change (Log2) |
||||
---|---|---|---|---|---|---|---|---|---|
Col-0 M | Col-0 P | sid2 M | sid2 P | Col-0 P/M | sid2 P/M | ||||
1 | At5g24770 | VSP2 | VEGETATIVE STORAGE PROTEIN2 | 2.9 | 7.6 | 10.4 | 1108.4 | 1.1 | 6.6* |
2 | At5g24780 | VSP1 | VEGETATIVE STORAGE PROTEIN1 | 0.8 | 1.9 | 1.8 | 260.4 | 0.7 | 6.5* |
3 | At4g16590 | CSLA01 | CELLULOSE SYNTHASE-LIKE A01 | 0.8 | 1.2 | 1.6 | 133.2 | 0.3 | 5.7* |
4 | At1g76790 | IGMT5 | INDOLE GLUCOSINOLATE O-METHYLTRANSFERASE5 | 0.6 | 0.4 | 1.8 | 116.5 | −0.2 | 5.4* |
5 | At4g17470 | – | α/β-Hydrolase superfamily protein | 1.1 | 2.6 | 2.7 | 148.8 | 0.8 | 5.3* |
6 | At2g24210 | TPS10 | TERPENE SYNTHASE10 | 0.1 | 0.5 | 0.5 | 54.8 | 0.4 | 5.3 |
7 | At3g11480 | BSMT1 | BENZOIC ACID/SALICYLIC ACID METHYLTRANSFERASE1 | 0.1 | 0.6 | 0.1 | 40.9 | 0.6 | 5.2* |
8 | At1g51780 | ILL5 | IAA-LEUCINE RESISTANT (ILR)-LIKE5 | 0.0 | 0.4 | 0.1 | 27.8 | 0.5 | 4.8* |
9 | At4g13410 | CSLA15 | CELLULOSE SYNTHASE LIKE A15 | 3.8 | 1.0 | 2.6 | 95.5 | −1.3 | 4.7* |
10 | At1g24070 | CSLA10 | CELLULOSE SYNTHASE-LIKE A10 | 1.3 | 1.0 | 1.4 | 55.0 | −0.2 | 4.5* |
11 | At3g28220 | – | TRAF-like family protein | 26.3 | 6.5 | 31.2 | 686.5 | −1.9* | 4.4* |
32 | At3g28290 | – | Sequence similarity to integrins | 2.4 | 0.5 | 1.9 | 28.9 | −1.2* | 3.4* |
33 | At3g28300 | – | Sequence similarity to integrins | 1.9 | 0.5 | 2.0 | 29.3 | −0.9* | 3.3* |
41 | At1g52000 | – | Mannose binding lectin superfamily | 28.5 | 6.6 | 33.4 | 306.8 | −2.0* | 3.2* |
70 | At2g43550 | – | Scorpion toxin-like knottin superfamily | 11.8 | 2.1 | 30.5 | 146.1 | −2.0* | 2.2* |
91 | At5g02940 | – | Protein of unknown function | 109.2 | 32.0 | 148.3 | 464.3 | −1.7* | 1.6* |
A total of 104 genes were identified with significant Psm-induced upregulation in distal leaves of sid2 but not Col-0 plants (Figure 3A). The genes were listed in descending order according to their sid2 P/M ratios. The 10 genes with highest P/M ratios in sid2 and all genes significantly downregulated in Col-0 (SAR− genes) from this group are depicted. The position of each gene in the list is indicated. Asterisks indicate significant changes between Psm and mock treatments (FDR < 0.01).