Table 4. Genes Systemically Induced in sid2 Are Strongly Enriched in JA-Responsive Genes.
| Gene Category | No. of Genes | JA-Inducible Genes (%)a | P Valueb |
|---|---|---|---|
| Whole gene setc | 15,239 | 3.2 | – |
| Col-0 up (SAR+) | 3,413 | 3.7 | 0.068 |
| sid2 up (total) | 845 | 12.8 | 9*10−38 |
| sid2 up/Col-0 not upd | 104 | 48.1 | 4*10−44 |
Percentage of JA-responsive genes in the total number of RNA-seq-analyzed genes and in different gene categories (as illustrated in the left Venn diagram of Figure 3A).
a
Percentage of genes determined to be JA inducible by Goda et al. (2008).
b
By Fisher’s exact test; indicates significance of enrichment.
c
After threshold cutoff.
d
Genes upregulated in sid2 but not in Col-0.