Table 4. Genes Systemically Induced in sid2 Are Strongly Enriched in JA-Responsive Genes.
Gene Category | No. of Genes | JA-Inducible Genes (%)a | P Valueb |
---|---|---|---|
Whole gene setc | 15,239 | 3.2 | – |
Col-0 up (SAR+) | 3,413 | 3.7 | 0.068 |
sid2 up (total) | 845 | 12.8 | 9*10−38 |
sid2 up/Col-0 not upd | 104 | 48.1 | 4*10−44 |
Percentage of JA-responsive genes in the total number of RNA-seq-analyzed genes and in different gene categories (as illustrated in the left Venn diagram of Figure 3A).
Percentage of genes determined to be JA inducible by Goda et al. (2008).
By Fisher’s exact test; indicates significance of enrichment.
After threshold cutoff.
Genes upregulated in sid2 but not in Col-0.