Table 2. Biological validation of RNA-Seq results.
Gene | qPCR (2−ddCt) |
P-value | Validated? | |||
---|---|---|---|---|---|---|
non-manipulated | sham-manipulated | albumen-deprived | ||||
C≠A; S≠A | SPAG4like | 1.00 ± 0.27 | 0.56 ± 0.23 | 0.75 ± 0.17 | NS | No |
S≠A | TNFSF10 | 1.00 ± 0.13b | 0.69 ± 0.09b | 1.40 ± 0.07a | 0.0006 | Yes |
LAPTM4B | 1.00 ± 0.16ab | 1.96 ± 0.62b | 0.50 ± 0.09a | 0.0520 | Yes | |
TMEM86A | 1.00 ± 0.07ab | 0.93 ± 0.15b | 1.42 ± 0.16a | 0.0489 | Yes | |
CKS1B | 1.00 ± 0.12ab | 1.74 ± 0.39a | 0.96 ± 0.08b | 0.0777 | Yes | |
NXPH2 | 1.00 ± 0.08a | 0.45 ± 0.07b | 1.06 ± 0.20a | 0.0091 | Yes | |
LRRC3C | 1.00 ± 0.14ab | 1.68 ± 0.45a | 0.70 ± 0.10b | 0.0776 | Yes | |
BMF | 1.00 ± 0.10ab | 0.74 ± 0.08b | 1.32 ± 0.12a | 0.0048 | Yes | |
SEMA6D | 1.00 ± 0.17ab | 1.70 ± 0.50a | 0.63 ± 0.08b | 0.0916 | No | |
H2B-I | 1.00 ± 0.16ab | 2.12 ± 0.68a | 0.67 ± 0.08b | 0.0681 | No | |
GLUL | 1.00 ± 0.14 | 1.20 ± 0.23 | 1.13 ± 0.12 | NS | No | |
HERPUD1 | 1.00 ± 0.10 | 1.38 ± 0.36 | 1.17 ± 0.29 | NS | No | |
SLC6A6 | 1.00 ± 0.11 | 1.18 ± 0.21 | 1.03 ± 0.06 | NS | No | |
LECT2 | 1.00 ± 0.29 | 1.33 ± 0.33 | 0.65 ± 0.16 | NS | No | |
GJA1 | 1.00 ± 0.11 | 0.94 ± 0.11 | 0.97 ± 0.12 | NS | No |
Gene expression of selected DE genes (P < 0.001 and log2-fold change >1) were measured in 8 samples per treatment via qPCR. a,btreatment means with different superscript are significantly different (P < 0.1).