Table 2.
Representative significant enriched GO terms of the differential expressed unigenes
| Seed status | Category | GO term | Refence set | Query set | P-value (FDR) | Representative gene ID | Encoded protein |
|---|---|---|---|---|---|---|---|
| Dormancy | BP | Para-aminobenzoic acid metabolic process | 130 | 19 | 2.20E-04 | TCONS_00105446 | glucosyltransferase |
| Oxalate catabolic process | 6 | 4 | 2.99E-03 | TCONS_00017169 | 4-coumarate--CoA ligase-like 10-like | ||
| N-acylethanolamine metabolic process | 34 | 9 | 6.41E-04 | TCONS_00047595 | fatty acid amide hydrolase-like | ||
| Glutamate biosynthetic process | 25 | 7 | 2.99E-03 | TCONS_00068711 | glutamate synthase 1 | ||
| Gibberellin metabolic process | 127 | 13 | 3.21E-02 | TCONS_00065700 | gibberellin 2-oxidase 2,3,5 | ||
| Flavonol biosynthetic process | 109 | 13 | 1.15E-02 | TCONS_00051510 | immediate-early salicylate-induced glucosyltransferase | ||
| Cutin biosynthetic process | 47 | 9 | 3.95E-03 | TCONS_00032450 | CYP77A19 | ||
| Auxin mediated signaling pathway | 548 | 43 | 8.41E-04 | TCONS_00056392,TCONS_00049526,TCONS_00102987,TCONS_00043746,TCONS_00029963,TCONS_00082867 | NTGP3, Nt-iaa4.5 deduced protein, IAA9, ARF1, IAA13, LAX2 | ||
| MF | Adenylyl-sulfate reductase activity | 5 | 4 | 1.43E-03 | TCONS_00030231 | APS reductase | |
| Carbon-nitrogen ligase activity, with glutamine as amido-N-donor | 200 | 19 | 1.85E-02 | TCONS_00077280 | amidase-like protein | ||
| Glutamate synthase (NADH) activity | 22 | 8 | 3.01E-04 | TCONS_00068708 | glutamate synthase 1 | ||
| Indole-3-acetic acid amido synthetase activity | 42 | 8 | 1.43E-02 | TCONS_00011340 | Nt-gh3 deduced protein | ||
| Isoflavone 2′-hydroxylase activity | 21 | 5 | 4.94E-02 | TCONS_00066756 | cytochrome P450 | ||
| Oxalate-CoA ligase activity | 6 | 4 | 3.69E-03 | TCONS_00017169 | 4-coumarate--CoA ligase-like 10-like | ||
| Phosphoadenylyl-sulfate reductase (thioredoxin) activity | 5 | 4 | 1.43E-03 | TCONS_00030231 | APS reductase | ||
| Germiantion | BP | ABA mediated signaling pathway | 547 | 35 | 3.19E-03 | TCONS_00022716, TCONS_00055623, TCONS_00066091 | bZIP, LEB5, calcium-dependent protein kinase 8 |
| Auxin mediated signaling pathway | 548 | 34 | 5.43E-03 | TCONS_00033126, TCONS_00075562, TCONS_00084884 | auxin efflux facilitator PIN3b, Nt-iaa28 deduced protein, germin like protein | ||
| Cinnamic acid biosynthetic process | 16 | 7 | 2.95E-05 | TCONS_00069919 | phenylalanine ammonia-lyase 4 | ||
| Cysteine biosynthetic process | 547 | 34 | 5.31E-03 | TCONS_00016976, TCONS_00018745, TCONS_00017791 | serine acetyltransferase 7, chloroplast pigment-binding protein CP24, ZIP | ||
| Ethylene metabolic process | 247 | 20 | 4.37E-03 | TCONS_00086037, TCONS_00008535, TCONS_00106286 | ethylene forming enzyme,WRKY transcription factor NtEIG-D48, Avr9/Cf-9 rapidly elicited protein 74 | ||
| JA mediated signaling pathway | 592 | 38 | 1.90E-03 | TCONS_00016976, TCONS_00057641,TCONS_00052052, TCONS_00055412, TCONS_00081296 | serine acetyltransferase 7, BOP3, WRKY DNA-binding protein, jasmonate ZIM-domain protein10, MAP kinase kinase | ||
| L-phenylalanine catabolic process | 50 | 7 | 1.79E-02 | TCONS_00069919 | phenylalanine ammonia-lyase 4 | ||
| Response to blue light | 372 | 25 | 9.11E-03 | TCONS_00051968 | chloroplast FtsZ-like protein | ||
| Response to far red light | 324 | 24 | 4.19E-03 | TCONS_00033254 | chlorophyll a/b-binding protein | ||
| Response to red light | 285 | 26 | 1.38E-04 | TCONS_00049275 | alpha-expansin precursor | ||
| SA mediated signaling pathway | 732 | 42 | 5.65E-03 | TCONS_00081296, TCONS_00055623, TCONS_00016976 | MAP kinase kinase, LEB5, serine acetyltransferase 7 | ||
| MF | Phenylalanine ammonia-lyase activity | 15 | 7 | 1.13E-05 | TCONS_00069919 | phenylalanine ammonia-lyase 4 | |
| Serine-type endopeptidase inhibitor activity | 34 | 10 | 4.64E-06 | TCONS_00053724, TCONS_00009793 | trypsin proteinase inhibitor precursor, cyclin-T1-3-like | ||
| UDP-glucosyltransferase activity | 581 | 39 | 4.20E-04 | TCONS_00002352, TCONS_00039739, TCONS_00066391 | glucosyltransferase, UDP-glucose, SA glucosyltransferase, flavonoid 3-O-glucosyltransferase | ||
| CC | Chloroplast thylakoid membrane | 1211 | 91 | 5.07E-14 | TCONS_00032434, TCONS_00018745, TCONS_00051968 | plastid transketolase, chloroplast pigment-binding protein CP24, chloroplast FtsZ-like protein | |
| Photosystem I reaction center | 28 | 9 | 1.81E-06 | TCONS_00002104, TCONS_00102030, TCONS_00067457 | PSI-H precursor, photosystem I subunit XI, PSI-H precursor | ||
| Photosystem II reaction center | 6 | 4 | 1.91E-04 | TCONS_00065835, TCONS_00027279 | photosystem II protein T, photosystem II reaction center PSB28 protein |