Table 2. Characteristics of plasmid CDSs from 21 characterised pCpec from C. pecorum pig, cattle, sheep, and koala strains.

Plasmid CDSs/ annotation	Predicted function	Length (bp)/ predicted a.a	No. of non- synonymous substitutions	dn*	No. of synonymous substitutions	ds*	dn∕ds	Δnt	No. of alleles
CDS 1/pGP8	Integrase	936/312	2	0.00113	5	0.00995	0.113	7	4
CDS 2/pGP8	Integrase	1,026/342	6	0.00278	7	0.01280	0.217	13	8
CDS 3/pGP1	Replicative DNA helicase	1,374/458	4	0.00148	7	0.01130	0.131	11	6
CDS 4/pGP2	Virulence plasmid proteina	1,026/342	2	0.00074	10	0.01881	0.039	12	6
CDS 5/pGP3	Virulence plasmid proteina	795/265	4	0.00290	6	0.01219	0.131	10	6
CDS 6/pGP4	Virulence plasmid proteina	309/103	0	0	3	0.01654	0	3	4
CDS 7/Par A	Plasmid partitioning protein	783/261	2	0.00097	8	0.01838	0.053	10	4
CDS 8/pGP6	Plasmid replication protein	744/248	2	0.01839	7	0.00141	0.077	9	6
Intergenic region (between CDSs 8 and 1)	Origin of replication	207/4 × 22 bp tandem repeats	n.a	n.a	n.a	n.a	n.a	2	3

Notes.

^aChlamydia specific.

^*d_s and d_n, the average number of synonymous substitutions per synonymous site and non-synonymous substitutions per non-synonymous site, respectively (Jukes—Cantor corrected); Δnt, No. of polymorphic sites; No. of alleles, No. of unique sequences of each CDS.