Table 2.
Details of the 26 regions with blast hits, which are hypothesized to be recurrently involved in divergent edaphic adaptation
| GenBank | SNP bp | SNP pos. a | Sequence description | GOs |
|---|---|---|---|---|
| KT587204 | 7/66/72 | Out | Protein aluminium sensitive 3 | C: plasma membrane; P: response to aluminium ion |
| KT587205 | 77 | First | UDP-glycosyltransferase 73c3-like | F: transferase activity, transferring glycosyl groups |
| KT587206 | 15/48 | Out | Translation machinery-associated protein 22 | P: translational initiation; F: translation initiation factor activity |
| KT587208 | 49/55 | Second/second | Probable calcium-binding protein CML23 | F: ion binding |
| KT587250 | 51/62 | Out | DUF616 family protein | — |
| KT587212 | 12/78 | Third/third | Copia-like retrotransposable | C: membrane; F: nucleic acid binding; F: zinc ion binding; F: anion binding; P: DNA integration; P: ammonium transport |
| KT587213 | 6/51 | Third/third | Trihelix transcription factor ASIL2-like | C: vacuole; F: chromatin binding; C: nucleus |
| KT587214 | 6/45 | Out | SNF2 domain-containing family protein | F: DNA binding; F: ion binding; F: helicase activity |
| KT587216 | 34/59 | Out | Protein NRT1 PTR family–like | P: transport |
| KT587248 | 33/63 | Out | Myosin-2-like isoform x1 | C: cytoskeleton; F: ion binding; C: protein complex; F: cytoskeletal protein binding |
| KT587249 | 52/79 | — | Uncharacterized locus | F: ion binding; P: tRNA metabolic process; P: cellular amino acid metabolic process; F: ligase activity; P: translation |
| KT587217 | 39/47 | Out | Ribonuclease 3 | C: plastid |
| KT587218 | 43/60/90 | Out | gag-pol polyprotein | F: nucleic acid binding; P: DNA integration; F: zinc ion binding; C: nucleus |
| KT587219 | 12/84 | — | e3 ubiquitin-protein ligase pub24-like | F: ubiquitin–protein transferase activity; P: protein ubiquitination |
| KT587220 | 42/58 | Out | R-recognition motif | — |
| KT587223 | 61/92 | Out | CBS domain-containing protein mitochondrial | F: adenyl nucleotide binding; P: metabolic process; F: catalytic activity |
| KT587224 | 35/80 | First/first | EH domain-containing protein 1 | C: cell; F: ion binding |
| KT587225 | 38/64 | Out | Type II inositol-trisphosphate 5-phosphatase FRA3 isoform x1 | P: lipid metabolic process; F: phosphatase activity; F: ion binding |
| KT587226 | 28/31 | Second/second | Uncharacterized protein TCM_034686 | — |
| KT587227 | 48/72 | Out | Hypothetical protein VITISV_008807 | P: oxidation–reduction process; F: heme oxygenase (decyclizing) activity; P: heme oxidation; F: transferase activity; P: metabolic process; F: sulfotransferase activity |
| KT587244 | 8/43 | Third/second | Hypothetical protein PRUPE_ppa021982mg | — |
| KT587247 | 24/40 | Second/third | SAUR-like auxin-responsive protein | — |
| KT587234 | 20/52/86 | Out/third/first | Uncharacterized loc101212813 | C: nucleus |
| KT587231 | 68 | — | ABC transporter b family member 19-like | C: integral component of membrane; F: ATP binding; F: xenobiotic-transporting ATPase activity; P: transmembrane transport; F: transmembrane transporter activity; F: ion binding; P: peptide transport; P: xenobiotic transport |
| KT587237 | 68/91 | Out | Mitogen-activated protein kinase 19 | P: signal transduction; F: ion binding; P: cellular protein modification process; P: cellular amino acid metabolic process; F: signal transducer activity; F: kinase activity |
| KT587245 | 69/75 | Second/second | (+)-Neomenthol dehydrogenase-like isoform x1 | F: oxidoreductase activity; P: oxidation–reduction process |
a SNP position refers to the position with respect of the reading frame, inferred from the blast result: out—out of ORF, first, second, and third refer to codon positions.