Table 3.
| A. Genes found to be commonly upregulated by at least 50% in two or more brain regions in response to SD. | |||
|---|---|---|---|
| Brain Regions | Probeset Name | Gene Name (UniGene Abbreviation) | Genbank # |
| BF and Cx | AJ000557cds_s_at | Janus kinase 2 (Jak2) | AJ000557 |
| rc_AI230211_s_at | Potassium voltage gated channel, Shal-related family, member 3 (Kcnd3) | AI230211 | |
| U17254_at | Immediate early gene transcription factor NGFI-B (Nr4a1) | U17254 | |
| AF030088UTR#1_at | Homer, neuronal immediate early gene, 1 (ania-3) | AF030088 | |
| X60769mRNA_at | CCAAT/enhancer binding protein (C/EBP), beta | X60769 | |
| rc_AI229237_at | Opioid receptor-like (Oprl) | AI229237 | |
| L13406_s_at | Calcium/calmodulin-dependent protein kinase II, delta (Camk2d) | L13406 | |
| AF030086UTR#1_at | Rattus norvegicus activity and neurotransmitter-induced early gene 1 (ania-1) mRNA, 3'UTR. | AF030086 | |
| S64320_at | K+ channel polypeptide; Shal1=K+ channel polypeptide [rats, hippocampus, mRNA, 3350 nt]. | S64320 | |
| Z38067exon_g_at | R.norvegicus DNA for c-myc, exon 2. | Z38067 | |
| AF027954_at | Bcl-2-related ovarian killer protein (Bok) | AF027954 | |
| U56261_s_at | Synaptosomal-associated protein 25 (Snap25) | U56261 | |
| U67140_at | Disks large-associated protein 4 (Dlgap4) | U67140 | |
| rc_AI045501_s_at | Neuronal pentraxin receptor (Nptxr) | AI045501 | |
| S82649_s_at | Narp=neuronal activity-regulated pentraxin [rats, hippocampus, mRNA, 2562 nt]. | S82649 | |
| U75397UTR#1_s_at | Rattus norvegicus Krox-24 mRNA, 3' untranslated region, partial sequence. | U75397 | |
| BF and Hy | M54987_at | Rat corticotropin releasing hormone (CRH) gene, complete cds. | M54987 |
| U17995_at | Rattus norvegicus kappa opioid receptor gene, exon 4 and complete cds. | U17995 | |
| U14647_g_at | Caspase 1 (Casp1) | U14647 | |
| Cx and Hy | U14005exon#1_s_at | Rattus norvegicus calcium channel alpha-1 subunit gene, partial cds. | U14005 |
| BF, Cx and Hy | rc_AI102299_s_at | BH3 interacting domain 3 (Bid3) | AI102299 |
| rc_AI176710_at | Nuclear receptor subfamily 4, group A, member 3 (Nr4a3) | AI176710 | |
| U17254_g_at* | Immediate early gene transcription factor NGFI-B (Nr4a1) | U17254 | |
| B. Genes found to be commonly downregulated by at least 50% in two or more brain regions in response to SD. | |||
|---|---|---|---|
| Brain Regions | Probeset Name | Gene Name (UniGene Abbreviation) | Genbank # |
| BF and Cx | U42719_at | Complement component 4a (C4a) | U42719 |
| D10891_at | Glutamate receptor, metabotropic 5 (Grm5) | D10891 | |
| M34384_at | Nestin (Nes) | M34384 | |
| M69055_at | Rat insulin-like growth factor binding protein (rIGFBP-6) mRNA, complete cds. | M69055 | |
| BF, Hy | AF053312_s_at | Small inducible cytokine subfamily A20 (Ccl20) | AF053312 |
| X13905cds_at | rab1B protein (AA 1 – 201); Rat cDNA for ras-related rab1B protein. | X13905 | |
| M22357_at | Myelin-associated glycoprotein (Mag) | M22357 | |
| Cx and Hy | S94371_at | GluR-4c; glutamate receptor subunit 4c {alternatively spliced} [mRNA, 3452 nt]. | S94371 |
| AJ006519_at | Amiloride-sensitive cation channel 2, neuronal (Accn2) | AJ006519 | |
| U04738_at | Somatostatin receptor 4 (Sstr4) | U04738 | |
| BF, Cx and Hy | rc_AA945583_at | Hydroxysteroid (17-beta) dehydrogenase 10 (Hsd17b10) | AA945583 |
*
Upregulation in hypothalamus during SD not confirmed by Taqman analysis.
Note also presence of this gene in BF and Cx category above under a different probeset name.