Table 1.
Comparison of assembly statistics of the original single-cell genomics (SAGs) and iSAGs presented here for SAR324 and MGI Thaumarchaeota.
| SAR324 |
MGI Thaumarchaeota |
|||
|---|---|---|---|---|
| Original SAG | iSAG | Original SAG | iSAG | |
| Completeness | 43.67 | 65.78 | 96.88 | 96.88 |
| Genome size (bp) | 2,264,488 | 2,379,063 | 1,104,470 | 1,093,884 |
| #Contigs | 672 | 13 | 32 | 4 |
| N50 (contigs) | 22,317 | 191,983 | 79,020 | 313,273 |
| Longest contig (bp) | 94,006 | 354,247 | 217,386 | 319,413 |
| GC | 41.49 | 42.59 | 35.66 | 35.61 |
| GC std (contigs > 1 kbp) | 3.98 | 0.76 | 2.1 | 0.75 |
| Coding density | 87.03 | 89.67 | 92.87 | 93.11 |
| #Predicted genes | 2,533 | 2,137 | 1,356 | 1,298 |
| #Complete genes | 1,827 | 2,120 | 1,307 | 1,290 |
| #Missing marker genes | 84 | 50 | 4 | 4 |
| #Marker genes in single copy | 104 | 141 | 138 | 142 |
| #Marker genes found multiple times | 3 | 0 | 4 | 0 |
| Contamination (checkM) (%) | 0.64 | 0 | 2.07 | 0 |
| Contamination (ProDeGe): (% Contigs) | 89.88 | 0 | 40.63 | 0 |
Std, standard deviation.