Skip to main content
. 2016 Feb 11;7:149. doi: 10.3389/fmicb.2016.00149

Table 1.

Primers, primer sequences, and cycling conditions used in the 16S rDNA and 16S–23S ITS PCR reactions.

Assay Primer name Primer Sequence (5′-3′) Annealing temperature (Ta) Cycling Conditions
16S rDNA PCR Sphingo 108f GCGTAACGCGTGGGAATCTG 62° C 95° C→5 min; 50 cycles of 95°C→5 s,62°C→10 s,
Sphingo 420r TTACAACCCTAAGGCCTTC 74°C→30 s, and 74°C →2 min
16S–23S ITS PCR 16S–1511f AAGTCGTAACAAGGTARCCG 60° C 95° C→12 min; 30 cycles of 94° C→30 s,
23S–23r YYGCCAAGGCATCCACC 60°C→30 s, 72°C→1 min, and 72°C→10 min
1492f AAGTCGTAACAAGGTAACC
115r GGGTTBCCCCATTCRG