Table 3.
Classes of RNAs detected by RNA-seq
| Total | Protein coding | pre-tRNA | rRNA | snRNA | snoRNA | miRNA | Other RNA | Pseudogene | TE | |
|---|---|---|---|---|---|---|---|---|---|---|
| Chr1-5 | 23,250 | 21,497/27206a | 0/631 | 2/4 | 13/13 | 18/71 | 66/177 | 339/394 | 368/924 | 947/3903 |
| ATMG | 126 | 121/122 | 2/21 | 3/3 | 0 | 0 | 0 | 0 | 0 | 0 |
| ATCG | 96 | 87/88 | 1/37 | 8/8 | 0 | 0 | 0 | 0 | 0 | 0 |
| Total expressed genes | 23472 | 21705/27416 | 3/689 | 13/15 | 13/13 | 18/71 | 66/177 | 339/394 | 368/924 | 947/3903 |
a Numbers in denominator are the total gene number of each type of RNAs annotated in TAIR 10.0 database (http://www.arabidopsis.org/portals/genAnnotation/genome_snapshot.jsp)