TABLE. Variable sites identified by next-generation sequencing and analysis of variants.
Sitea | QVb | Covc | Majd | Vare | Freq (%) | pf | SB (50%) | Type | Posg | aah |
---|---|---|---|---|---|---|---|---|---|---|
1887 | 31 | 295 | C | T | 18.3 | 1.9 x 10-108 | 0.34 | NS | t at | His593Tyr |
2632 | 30 | 456 | A | G | 19.3 | 2.6 x 10-140 | 0.54 | NS | c g a | Gln844Arg |
a : according to the GenBank RefSeq NC_002640.1;b : quality value (QV) score for base call;c : sequencing coverage (Cov) at position;d : nucleotide found in the majority (Maj) sequence;e : nucleotide found in the variant (Var) sequence;f : variant p-value; g : position at the codon (bold); h : position according to the GenBank RefSeq NP_073286.1; aa; amino acid; Freq: frequency; NS: nonsynonymous; SB: strand-bias.