Table 3.
Some selected differentially expressed genes detected by digital expression profiling in apical bud of castor bean.
| Functional group | Gene ID | Gene annotation | log2ratio | ||
|---|---|---|---|---|---|
| ABML1/ABPL1 | ABML2/ABPL2 | RML/RPL | |||
| RESPONSE TO HORMONE STIMULUS | |||||
| gi|255573875|ref|XM_002527811.1| | Dynamin-2A | −8.05 | −3.54 | −8.54 | |
| gi|255538885|ref|XM_002510462.1| | Auxin response factor (transcription DNA-dependent) | −3.58 | 1.00 | −3.66 | |
| gi|255546086|ref|XM_002514057.1| | PCI domain-containing protein | −3.66 | 3.58 | 4.84 | |
| gi|255543197|ref|XM_002512616.1| | ATP-binding protein | 1.15 | −6.23 | 4.84 | |
| gi|255550142|ref|XM_002516076.1| | Spermidine synthase (auxin transport, polyamine biosynthetic process) | −5.71 | 1.36 | −1.54 | |
| gi|255568254|ref|XM_002525056.1| | Xaa-pro amino peptidase (auxin transport) | −1.77 | 1.50 | −1.78 | |
| gi|255560413|ref|XM_002521176.1| | conserved hypothetical protein (ABA and carotenoid metabolic process) | −4.56 | 4.56 | 3.58 | |
| TRANSCRIPTION, DNA-DEPENDENT | |||||
| gi|255558565|ref|XM_002520262.1| | MADS box protein | −2.52 | −4.90 | −2.80 | |
| gi|255583281|ref|XM_002532359.1| | DNA-binding protein | 3.58 | 3.66 | 3.58 | |
| gi|255572532|ref|XM_002527155.1| | Axial regulator YABBY5 | −1.18 | 8.07 | 5.69 | |
| gi|255538455|ref|XM_002510247.1| | DNA-binding protein | −2.08 | 1.31 | 4.14 | |
| gi|255558973|ref|XM_002520464.1| | transcription initiation factor | 3.58 | −3.58 | 3.58 | |
| gi|255565967|ref|XM_002523926.1| | RNA polymerase sigma factor rpoD1 | −5.14 | −4.54 | 4.14 | |
| gi|255558989|ref|XM_002520472.1| | protein with unknown function | −1.15 | −1.80 | 3.58 | |
| gi|255538885|ref|XM_002510462.1| | Auxin response factor | −3.58 | 1.00 | −3.66 | |
| SIGNAL TRANSDUCTION | |||||
| gi|255555566|ref|XM_002518774.1| | gcn4-complementing protein | −5.16 | −1.07 | −4.56 | |
| gi|255550049|ref|XM_002516030.1| | protein with unknown function | −4.92 | 3.62 | −1.57 | |
| gi|255585732|ref|XM_002533502.1| | Histidine-containing phosphotransfer protein | −5.39 | 4.87 | −3.62 | |
| gi|255584316|ref|XM_002532848.1| | Cyclic nucleotide-gated ion channel | −3.58 | 3.66 | −4.14 | |
| SEX DIFFERENTIATION | |||||
| gi|255557726|ref|XM_002519847.1| | arginine/serine-rich splicing factor | −4.56 | 3.66 | 3.58 | |
| POLLINATION | |||||
| gi|255560126|ref|XM_002521035.1| | acid phosphatase | −2.42 | 1.27 | 1.90 | |
| PROGRAMMED CELL DEATH | |||||
| gi|255539309|ref|XM_002510674.1| | Ricinus communis cysteine protease | −4.22 | 3.66 | −4.54 | |
| DEVELOPMENTAL PROCESS INVOLVED IN REPRODUCTION | |||||
| gi|255577146|ref|XM_002529411.1| | 1,4-alpha-glucan branching enzyme | −1.02 | 4.20 | −3.62 | |
| gi|255588742|ref|XM_002534658.1| | DNA replication helicase dna2 | −1.45 | 5.71 | −1.96 | |
| gi|255568769|ref|XM_002525310.1| | sentrin/sumo-specific protease | −1.66 | 2.32 | 1.29 | |
| gi|255578470|ref|XM_002530054.1| | U4/U6 small nuclear ribonucleoprotein Prp4 | −6.24 | 4.20 | 4.22 | |
| gi|255544821|ref|XM_002513426.1| | sorting and assembly machinery (sam50) protein | −3.66 | 4.20 | 4.14 | |
| HISTONE DEMETHYLATION/METHYLATION | |||||
| gi|255565532|ref|XM_002523711.1| | eukaryotic translation initiation factor 2c | −3.58 | 1.29 | 1.67 | |
| gi|255575536|ref|XM_002528623.1| | set domain protein | 2.78 | −4.20 | −4.14 | |
| gi|255553976|ref|XM_002517983.1| | DNA (cytosine-5)-methyltransferase | −4.89 | 3.58 | −3.62 | |
| gi|255558643|ref|XM_002520301.1| | s-adenosyl-methyltransferase mraw | 1.23 | 3.66 | 5.33 | |