Table 3. Summary of ortholog group analysis with differential expression (DE) data from Whiston et al. 2012.
| Ortholog Groups | Include | Exclude | % w/Pfam Domain(s) | Co. immitis DE | ||
|---|---|---|---|---|---|---|
| Up. Sap. | Up. Par. | No change | ||||
| 5046 | All | — | 83.5 | 17.4 | 14.9 | 67.7 |
| 420 | N | C, U, D, Y, O | 56.0 | — | — | — |
| 9 | C, U, D, Y, O | N | 80.5 | — | — | — |
| 791 | C | N, U, D, Y, O | 7.4 | 3.4 | 29.1 | 67.5 |
| 41 | N, U, D, Y, O | C | 61.0 | — | — | — |
| 238 | C, N | U, D, Y, O | 32.4 | 10.1 | 19.4 | 70.5 |
| 10 | U, D, Y, O | C, N | 85.5 | — | — | — |
| 232 | C, N, U | D, Y, O | 33.3 | 12.9 | 20.7 | 66.4 |
| 90 | D, Y, O | C, N, U | 65.1 | — | — | — |
| 96 | C, N, U, D | Y, O | 57.8 | 16.3 | 13.3 | 70.4 |
| 222 | Y, O | C, N, U, D | 70.0 | — | — | — |
| 175 | C, N, U, D, Y | O | 45.4 | 16.3 | 20.5 | 63.2 |
| 1368 | O | C, N, U, D, Y | 64.6 | — | — | — |
Letter designations from Figure 1 used to designate phylogenetic groups: N, newly sequenced genomes; C, Coccidioides; U, U. reesii; D, dermatophytes; Y yeast-forming dimorphic fungal pathogens (YDFP); O, outgroups