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. 2016 Feb 12;16:6. doi: 10.1186/s12898-016-0059-y

Table 2.

Bayesian general linear mixed models testing the influence of several predictor variables on the probability of sharing the same E. coli MLST or a single locus variant

Model Predictor Posterior mean coefficient 95 % Confidence interval MCMCglmm P value Odds ratioa
A Intercept −2.64 −3.63, −1.74 <0.001
(DIC: 474.2) Same sex −0.27 −0.83, 0.26 0.346 0.76
Same birth year −0.46 −1.83, 0.81 0.502 0.63
Same natal group 0.09 −1.07, 1.26 0.879 1.09
Same group 1.04 0.1, 2.16 0.048 2.83
Same sampling month 0.05 −0.59, 0.67 0.879 1.05
Same sampling method 0.05 −0.78, 0.8 0.88 1.05
B Intercept −2.87 −4.12, −1.64 <0.001
(DIC: 305.96) Same sex −0.34 −1.04, 0.35 0.354 0.71
Same birth year −2.36 −5.2, 0.15 0.037 0.09
Same natal group 0.55 −1.24, 2.38 0.565 1.73
Space-use sharing (UDOI) 0.43 0.07, 0.78 0.021 1.54
Same sampling month 0.22 −0.65, 1.04 0.585 1.25
Same sampling method −0.12 −1.06, 0.9 0.831 0.89
C Intercept −2.91 −4.22, −1.71 <0.001
(DIC: 305.87) Same sex −0.31 −1.05, 0.37 0.386 0.73
Same birth year −2.31 −5.15, 0.18 0.046 0.1
Same natal group 0.32 −1.8, 2.16 0.741 1.38
Intergroup encounter rate 0.46 0.12, 0.81 0.015 1.58
Same sampling month 0.18 −0.7, 1 0.665 1.2
Same sampling method −0.05 −1, 1.02 0.949 0.95

Models B and C included only the 8 neighboring groups and excluded ties within the same social group. UDOI and intergroup encounter rate were z-transformed. Significant P values (<0.05) are printed in italics

aThe odds ratio is the multiplicative increase in the odds of sharing the same or a closely related ST with each unit increase in the explanatory variable