TABLE 1.
Parameter | Result for strain: |
||||
---|---|---|---|---|---|
HTCC2181a | KB13a | MBRS-H7 | MMS-2-53b | MMS-10A-171b | |
No. of contigs | 3 | 1 | 1 | 1 | 1 |
Genome size (bp) | 1,304,428 | 1,334,326 | 1,352,785 | 1,356,428 | 1,754,988 |
GC (%) | 37.9 | 35.4 | 35.5 | 36.97 | 44.52 |
ORF | 1,320 | 1,382 | 1,377 | 1,389 | 1,757 |
tRNAs | 36 | 36 | 36 | 36 | 39 |
Isolation point | Oregon | Hawaii | Red Sea | Zurich | Zurich |
Isolation source | Seawater | Seawater | Seawater | Lake | Lake |
ANIc (%) | |||||
With respect to HTCC2181 | 100 | 66.34 | 65.95 | 65.98 | 65.48 |
With respect to KB13 | 66.26 | 100 | 94.19 | 65.83 | 66.14 |
Growth rate (generations per day)d | 1.5 | NDe | 1.5 | 0.37 | ND |
Genomes were reannotated in the INDIGO pipeline. Open reading frame (ORF) and RNA predictions may vary from those in the original data.
MMS-2-53, “Ca. Methylopumilus planktonicus”; MMS-10A-171, “Ca. Methylopumilus turicensis” (7).
ANI, average nucleotide identity.
ND, not determined.